XLOC_019806 (med31)


Basic Information

Item Value
gene id XLOC_019806
gene name med31
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 40045224 ~ 40049642 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038969
AAATGGCGTCAGCGGTCTATGTCCGCATAAACAATGAGTAATGTGTTGTTTTTGGTAATCGCGctctaaaaaatctttttatacTAATCATTTTCCAGATATTTCAGCGTCGTCTGAATTCTCGTTGTCCGTAATGGCTGGTGTTATGGAAACAGACGAGCAGGCGAGACAGCGCTTTCAGCTGGAGCTGGAGTTTGTTCAATGTCTGGCAAACCCAAACTACCTGAACTTTCTGGCTCAGAGAGGTTACCTGAGAGAGAAGCCTTTCGTCAATTATTTAAAGTATCTGCTTTATTGGAAGGAACCAGAATATGCTAAATTTCTAAAATATCCTCATTGTCTGCACATGTTGGAGCTGTTGCAGTATGAGCACTTCCGGAAGGAGCTGGTGAACGCACAGTGTGCCAAGTTCATAGATGAACAGCAGATCCTGCACTGGCAGCATTACTCCAGAAAACGCACCCGTTTACAGCAGGCGCTGGCGgaacagcagcaacaacagcagCCACAGGCTCCATCACATGCCAACACCACCTCCAAATGAGACTCAAGCTTTTCAGATGGGCTTTTAGATATTTTTACAAACAGACTTTGACTTTCACACTGCTCTCTGTAGGCCAATAATGTTAAGTGTGTTTGAGCGACAGGAGAGTAACGGTAAAAAGAAGGTAAGAGGAGAGTGAAATCATTTGTATTACACTTTTCTGTTCTAGTATGAATTTgtgaataaacatttaattagttacagatttaaatttctttatttgCTCGAACTCCATTTGTTACCTGCTTcagttattaaatatgtttattatgcTTGTGTACATTttggacaaaaataaacataaaataaaatgattaaaaaaaaaaa

Function

symbol description
med31 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Orthologous to human MED31 (mediator complex subunit 31).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0070847 core mediator complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016592 mediator complex cellular_component
GO:0003712 transcription coregulator activity molecular_function

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-040718-114 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Orthologous to human MED31 (mediator complex subunit 31).

Ensembl:

ensembl_id ENSDARG00000008020

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038969 True 871 mRNA 0.39 4 40045224 40049642

Neighbor

gene id symbol gene type direction distance location
XLOC_019805 BX248108.1 coding downstream 5046 40021263 ~ 40040178 (-)
XLOC_019804 slc47a2.1 coding downstream 29694 39992151 ~ 40015530 (-)
XLOC_019803 tmigd1 coding downstream 113824 39925379 ~ 39931400 (-)
XLOC_019802 NA coding downstream 120780 39923770 ~ 39924444 (-)
XLOC_019801 NA coding downstream 133117 39905903 ~ 39912107 (-)
XLOC_019807 slc13a5a coding upstream 4024 40053666 ~ 40083567 (-)
XLOC_019808 slco2b1 coding upstream 89394 40139036 ~ 40174677 (-)
XLOC_019809 si:ch211-218m3.9 coding upstream 198478 40248120 ~ 40250500 (-)
XLOC_019810 or101-1 coding upstream 264235 40313877 ~ 40317054 (-)
XLOC_019811 CR847523.3 coding upstream 288391 40338033 ~ 40348790 (-)
XLOC_019794 NA non-coding downstream 683048 39359151 ~ 39362176 (-)
XLOC_019793 NA non-coding downstream 708128 39328103 ~ 39337096 (-)
XLOC_019791 CU442763.1 non-coding downstream 777918 39267225 ~ 39267306 (-)
XLOC_019814 NA non-coding upstream 479145 40528787 ~ 40579807 (-)
XLOC_019825 CU570984.1 non-coding upstream 1201789 41251431 ~ 41251548 (-)
XLOC_019828 CABZ01034722.1 non-coding upstream 1301903 41351545 ~ 41351665 (-)
XLOC_019831 NA non-coding upstream 1541228 41590870 ~ 41593163 (-)
XLOC_019838 NA non-coding upstream 1994332 42043974 ~ 42048805 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000041_00831120_00832182 MED31.S, MED31, MED31.L coding CI01000041 null 830793 ~ 832182 (-)