zgc:110319 (nfu1)


Basic Information

Item Value
gene id zgc:110319
gene name nfu1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83840756 ~ 83851899 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614180.2
CAATTGGAATCTATTTCAAACAGGATATGTGAAGCCAGCTGTGTCTTGGGTCCTcactttaaaaacaaatgaaatggCTGCCCGCATAAGATGGAGTCTTCAACGGTTGATTCAGTCACGAAATACATCACATTTTAGGTTTCCAATCAACACGAGAAACCAGTTCCACACACAATGCATTGGCCCGAACTACAGAAAAGTTCAACTTCTGCCTCTGACTGGACCCCCACAGTTCGTAGTGCGACACTTGTCCATTCAGACACAGGACACACCAAACCCACGGAGCTTGAAGTTCATCCCTGGTAAGCCTGTGTTGGGGGTGGGGACCCTGGATTTCCCCTCTCCAAGCTCTGCAGAGTGCTCCTCCTTAGCCAGGGACCTGTTTGGAATCGAAGGAGTGAAAAGTGTGTTCTATGGTCCTGACTTCATCACAGTGACCAAGGCAGATGATGATGTGGAGTGGACGGACATCAAGCACCATGCCATGGATGCTATCACTAAGTTCTTTGACAGTGGAGACCCCATAACCACTGGGGTTACCCACCATGAGAGCAgtcactcTGAAGATGATGATGAAATTGTTTCAATGATAAAGGAGCTTCTAGATACACGGATCAGGCCCACGGTGATGGAGGATGGCGGTGATGTCATCTTCAAGGGCTTTGAGAACGGCACGGTGAAGCTGAAGCTGGTTGGCTCATGCACCGGCTGCCCCAGCTCTACTGTCACCCTGAAGAATGGCATCCAGAACATGCTGCAGTTCTACATCCCTGAGGTGGATGACGTGGAACAGGTGGAAGATGAAGTGGATCATGTAAATGCAACGGTTTTCACCGAGTTGGAACGCAAGTTAGGAGACATATAAAACTTCTGTCAGCCCCCAGGCCTATAGATAAAGTCTGTTGTATAGAAGCCTTGCAAACCAGGTAGATACTGCTTCCGCTACCTTAGTGCAATGTTCATGTTTTAAAATAATATTCAGCATTGCCCTTTCAAAATACCAACTGTAGTGTGCTGTAGGCTGTTGTTTTTGTCTTTCATTTACTCAAATACTGTATATTACTATTACAATGAAGCCAggccacacactgacacatttaTACTGTTTCTCTTCCATTGTAAAGGCCGAAAACTCTGAAGAAGGCAGTTatgttatatattttatatttatttctttGCAGGTTGAGTTACAAATTTACCCtcatatgtttaaaaaaatatatatattctctgATGAAAGGACATTCTGTGATGGTTTGAGTTAAGGGATATGGTTTAAATCTATCCCTAGGCCAAGCATGACCAATTGTTTATATGAAATGATCACAAGATATGGCACAGTTAAAACGACAAAATGATTTAGCTGTATATGTTTCTTTGTGAATGCATTGTTCAGGAGTCTACACATAGTAatcacattaacacatttacatttaTGGCATGGGCACATGCTCATTTATATTTAATCTCTCGTGGAGAGACGACGTAAACAAATGGTATCATAGATATGTCAACGGGATGCATGACATAACGAGCAGCATTAATTCTGTTGCTTGGGTTTTTCttcactggttatttggacacATCACGATTTTGTAGGTGTTGGCATCTTTCACATtttggaaggagaggggacattCGGCCCATTTTGACTTGCCTGTAAATTGCAGAGAGAGTGGAGCTCTTCGTTCCGATTCTCGTTCTGTATCTTCTCCTAATAcgtatggacccagaacttaatcGAGCATCTGACCAATTCCACAatactttagttctgggttaaccaagaTTAATTTATATTCATCATATAGATTGCAGTACATCTACTCTTAAAGAAAGCTTTATGTGAAATACTGTGATAAATGTTGCGCAATGATTCAAGTTCTTTGAATGGATACTAATCACCCATTCACTTGTATATGCATTGCAATTGTAACAGTTCCAGCTGCAATCTCATATGGCTGATACAGAAGTCCGAATCATACTAGTATCACAAAGGAAAATGTAATGGTTATTTTGTCCCATTCGTGGAATCATCTCGTTGTATTATTATATTGCTCTTGTTTTCAGAAACCAAAACTTGTGGGAATAACCTTTTGATATAGCTTTGCTGTCTTTGTTTCCAACATCAACTCAATAATCAGATTtatcaaataaaatttgattgatcaca

Function

symbol description
nfu1 Predicted to enable 4 iron, 4 sulfur cluster binding activity and iron ion binding activity. Predicted to be involved in iron-sulfur cluster assembly and protein maturation by iron-sulfur cluster transfer. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in multiple mitochondrial dysfunctions syndrome 1. Orthologous to human NFU1 (NFU1 iron-sulfur cluster scaffold).

NR:

description
NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005737 cytoplasm cellular_component
GO:0005506 iron ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614180.2 True 2173 mRNA 0.41 8 83840756 83851899

Neighbor

gene id symbol gene type direction distance location
LOC110530850 LOC106577251 coding upstream 23240 83798431 ~ 83817516 (+)
LOC110530841 LOC106613168 coding upstream 42700 83721859 ~ 83798056 (+)
LOC110530763 LOC106577187 coding upstream 173085 83511117 ~ 83667671 (+)
LOC110530741 LOC106577189 coding upstream 356745 83452248 ~ 83484011 (+)
LOC110530670 NA coding upstream 398625 83407651 ~ 83442131 (+)
LOC110530876 LOC106577249 coding downstream 667 83852566 ~ 83889994 (+)
LOC110530893 LOC106577247 coding downstream 51883 83903782 ~ 83951597 (+)
zgc:154058 LOC106577246 coding downstream 125219 83977118 ~ 84031022 (+)
LOC110530965 fam213a coding downstream 231091 84082990 ~ 84097350 (+)
LOC110531002 NA coding downstream 256509 84108408 ~ 84112085 (+)
G94379 NA non-coding upstream 38407 83801618 ~ 83802349 (+)
G93525 NA non-coding upstream 63855 83776547 ~ 83776901 (+)
G93524 NA non-coding upstream 64350 83775980 ~ 83776406 (+)
G93523 NA non-coding upstream 65706 83774552 ~ 83775050 (+)
G93522 NA non-coding upstream 67835 83772374 ~ 83772921 (+)
G94401 NA non-coding downstream 20609 83872508 ~ 83935450 (+)
G94440 NA non-coding downstream 96806 83948705 ~ 83948936 (+)
G94449 NA non-coding downstream 114652 83966551 ~ 83966754 (+)
G94451 NA non-coding downstream 115981 83967880 ~ 83968109 (+)
G94452 NA non-coding downstream 121372 83973271 ~ 83973671 (+)
G93362 NA other upstream 507180 83333266 ~ 83333576 (+)
G93204 NA other upstream 750824 83088531 ~ 83089932 (+)
G92575 trmt13 other upstream 1658960 82180946 ~ 82181796 (+)
G94463 NA other downstream 193412 84045311 ~ 84048149 (+)
LOC110532822 LOC106577256 other downstream 530858 84373236 ~ 84410052 (+)
G95702 NA other downstream 1288241 85140140 ~ 85141006 (+)
G95821 NA other downstream 1382922 85234821 ~ 85235394 (+)
G96133 NA other downstream 1785848 85637747 ~ 85638055 (+)

Expression


Co-expression Network