G20142 (hpln4)


Basic Information

Item Value
gene id G20142
gene name hpln4
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 20564064 ~ 20565568 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU23498
CTCACAGAATCAGTTTTAATGAACAACATTGTCAAGATCTAATTTATTACTTTTGAATCACAGCTTCAGCATATAGCCCTCGCTATAGATACAATTCATACATCAAGATAATGACTGATACAGTTAAATTGTGGTTTTCACAATTGAACAAATAGTGCAATCAATGGCCATGGCTGCATAGAAACATGGTGTAATCAAGCAGCTATTAAAGCAGCTATAACAAAGTTCAGTTAGATCAGCATCAGTTACTAAAATTAGCTCCAGGTAAAACATGCTTGCTATAGACTAACCATTTCCTCATAAAATATATCTAATTAAAAGTGCAACATTCACTATGTTTATTGAGCTCTGGTACGGTTGCCAGTACTTAGTTAGTTACTGAGGAGAAACGTTTCAGATGGCTCTACCCAAACATGGCAACCGGATAGAGGCGGACGACTGGGGGCGCAGTAGAACTCAAAGGGCACCTCTAAGCAGTGCTCTGCCATGCCAGGCAACATTTGCAGATAGATTAGGCATGATAGTAGTCTGTTTTAAAGCTTATCATCAGTATCTGCTAATCAGGGGCTCGCTTAATGCGCTGCATTCAttacagtcagacagacataGTAAatgatctgtctctgtctccacagCCCGCTAATTAATGTGACTCTCTCCGGCTGGCACTGCTTAAAGTCGAGTGCTTTTCGCAAAGGACCTTTTCCTTCAGAAATGAAGCCACATGGAGAACAGAACACACTGTGAAGTCTGAGCCCCCATCATGCCTgtggtctctctccatgtctctaatAGACGCATAGTAAACAATGGCCTTAATTTTTGTGCCTGGGAAATAATGATCTGATGCATTTACTAGCTAAGCCTCTCTGAGACAATGGTGGACGCACAAACCAACCTCAACGTGACTCCCACCTCATTTAAGACAAGAGAAATCACGGAGATAAAGATTCCGCCCCTAACTGAACCACGCTCTTTCTGGTGAATCCTGCTGCAAATTAGCATGTCTTGTCAGTAATGTTCAGCAACATTGTTTATTTTAAAGCAATGGATGGAGCTATGTTGTAGCAGCAGTGATCCTAATAAACCCTTGTCTCAGTCTCTCTAGATGTTTCTGGTGGTAGTGGTGTTCATGGGGATGTCCTTGCTGCTCTTCCCTGGGCGCTGTGTCATCTTAACTACATCAACATTAACATTCTCTTGGTTCTTGCGGAAGCAGTAAACCCCGTAGAGCCGGAACTTCAAGTCGGGGAAGCCCAGGTGGCGGACCCCCGGTTGGGGCCCTCCGCAGCGGGTGCGTGGGTTGACGATGGGGTAGCGGATACTTGCGTCCTCCAGCCAGCCGGCCTCACAGCGATCCAGTAGCTGGATCTTCCAGGCAGCATAGAGCTGACCCACCTTGGCCACCACCGAGCTGTCACGCAGGCACgccttcactgcctcagcatagtTAACCTTCTTAAAACGCTTCAGGAA

Function

NR:

description
hyaluronan and proteoglycan link protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23498 True 1476 lncRNA 0.41 2 20564064 20565568

Neighbor

gene id symbol gene type direction distance location
trnaa-agc NA coding downstream 36240 20527752 ~ 20527824 (-)
LOC110506262 LOC106573581 coding downstream 82252 20367990 ~ 20481812 (-)
LOC110505853 LOC106573580 coding downstream 201998 20320374 ~ 20362066 (-)
gpx4a LOC106573579 coding downstream 245316 20311803 ~ 20318748 (-)
LOC110505771 LOC106573576 coding downstream 253949 20227187 ~ 20310115 (-)
LOC110532063 ncan coding upstream 21018 20586586 ~ 20842911 (-)
LOC110506380 NA coding upstream 319969 20885537 ~ 20902039 (-)
rfxank rfxank coding upstream 354058 20919626 ~ 20922933 (-)
tmem221 LOC106573585 coding upstream 362241 20927809 ~ 20932452 (-)
LOC110532071 LOC106573588 coding upstream 422488 20988056 ~ 21005209 (-)
G20089 NA non-coding downstream 6671 20465333 ~ 20557393 (-)
G20067 NA non-coding downstream 129225 20434317 ~ 20434839 (-)
G20032 NA non-coding downstream 260243 20303589 ~ 20303821 (-)
G20029 NA non-coding downstream 262971 20300858 ~ 20301093 (-)
G20028 NA non-coding downstream 263989 20299853 ~ 20300075 (-)
G20149 NA non-coding upstream 9463 20575031 ~ 20575235 (-)
G20175 NA non-coding upstream 77656 20643224 ~ 20643961 (-)
G20209 NA non-coding upstream 129424 20694992 ~ 20695369 (-)
G20224 NA non-coding upstream 157572 20723140 ~ 20723618 (-)
G20272 NA non-coding upstream 242317 20807885 ~ 20808113 (-)
LOC110502937 ccl25 other downstream 931447 19630376 ~ 19633058 (-)
mydgf LOC106573827 other downstream 1678412 18876547 ~ 18888907 (-)
LOC110497762 LOC106573859 other downstream 2169204 18390123 ~ 18450517 (-)
LOC110497564 LOC106573866 other downstream 2469126 18089520 ~ 18098678 (-)
G16161 LOC106573901 other downstream 3306823 17255236 ~ 17257241 (-)
G20266 NA other upstream 233552 20799120 ~ 20800008 (-)
LOC118945319 NA other upstream 519730 21085298 ~ 21089250 (-)
LOC110507736 LOC106573601 other upstream 970365 21535882 ~ 21565723 (-)
G21993 NA other upstream 1816302 22381870 ~ 22382208 (-)
G22350 LOC106573623 other upstream 2274277 22839845 ~ 22843305 (-)

Expression


Co-expression Network