G25115 (zfpm1)


Basic Information

Item Value
gene id G25115
gene name zfpm1
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25280592 ~ 25281030 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU28960
GAATGAGGAAATGTGGCATGGTGAACTGTTGGTCTTCATTGAGTCCCTCAGTGTCTGTTGTTTACATGGAAAGTGTTGTAACTGTACATGTGTAGGGTTTGTCTACGCATCTAATGACTAAACGGCACGAAGAACACTAATACATGCATGCACATTCGCATGCagtgcgcacacacatacacacccacattaTTCTTGGCAAGCTGACACTCACTGTTGACAACTGCCGTGGCCAAGATGGCTGCCATCCCAGCCTGCTGGGGGAGGAGCTGTATCTCAGAGTGGAGAGAAGCTGGGTAGACACCTGTAGGCTCCTCCTTCACCACCACATCCTGGGTCTGAGACGAGGACAGCTGCTTCacggaggagagagacagtgtggcCAACAGACTGTCACCTGTGGAGATGTCCTGGGTCACCTTACAATACAGCTCCTCAc

Function

symbol description
zfpm1 Predicted to enable DNA binding activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and metal ion binding activity. Acts upstream of or within heart looping and hemopoiesis. Predicted to be active in nucleus. Is expressed in several structures, including intermediate cell mass of mesoderm; lateral plate mesoderm; myeloid cell; otic vesicle; and pericardial region. Orthologous to human ZFPM1 (zinc finger protein, FOG family member 1).

NR:

description
PREDICTED: zinc finger protein ZFPM1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28960 True 439 TUCP 0.51 1 25280592 25281030

Neighbor

gene id symbol gene type direction distance location
kiaa0513 kiaa0513 coding downstream 108006 25154725 ~ 25172586 (-)
LOC110519226 LOC106573688 coding downstream 168361 25089296 ~ 25112992 (-)
LOC110519016 LOC106573687 coding downstream 197354 25044445 ~ 25083238 (-)
LOC118956655 NA coding downstream 260204 25012181 ~ 25020388 (-)
LOC110518671 klhl36 coding downstream 327278 24944908 ~ 24972465 (-)
LOC110519951 LOC106573692 coding upstream 91800 25372830 ~ 25381869 (-)
LOC118959932 chtf8 coding upstream 178712 25459742 ~ 25463093 (-)
LOC110520001 wfdc1 coding upstream 192506 25473536 ~ 25485212 (-)
LOC110520008 kcng4 coding upstream 256085 25537115 ~ 25566593 (-)
LOC110520015 LOC106573699 coding upstream 398879 25679909 ~ 25712438 (-)
G25114 NA non-coding downstream 1905 25278465 ~ 25278687 (-)
G25110 NA non-coding downstream 6823 25273542 ~ 25273769 (-)
G25042 NA non-coding downstream 101919 25178355 ~ 25178673 (-)
G25040 NA non-coding downstream 103844 25176513 ~ 25176748 (-)
G25037 NA non-coding downstream 111076 25169281 ~ 25169516 (-)
G25118 NA non-coding upstream 1095 25282125 ~ 25282666 (-)
G25120 zfpm1 non-coding upstream 2493 25283523 ~ 25287060 (-)
G25119 NA non-coding upstream 6457 25287487 ~ 25288484 (-)
G25130 NA non-coding upstream 14035 25295065 ~ 25295323 (-)
G25131 NA non-coding upstream 14313 25295343 ~ 25295645 (-)
LOC118956210 NA other downstream 341891 24910984 ~ 24938701 (-)
znf276 znf276 other downstream 415758 24853824 ~ 24865158 (-)
LOC110514811 ccl8 other downstream 727030 24552392 ~ 24554074 (-)
G24542 NA other downstream 1054102 24222907 ~ 24226490 (-)
G25117 zfpm1 other upstream 574 25281604 ~ 25282018 (-)
LOC110520292 gnao1 other upstream 2355058 27631001 ~ 27781768 (-)
G28870 NA other upstream 2776413 28057443 ~ 28066305 (-)
G29355 NA other upstream 3422857 28703887 ~ 28704356 (-)
G29906 mef2a other upstream 3999246 29280276 ~ 29280700 (-)

Expression


Co-expression Network