G39217


Basic Information

Item Value
gene id G39217
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 37017292 ~ 37017552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU44318
GGTCATTATTCGGGCATATTTGAGGCCCTTGCTGGCTAGCAGAGCAGTGGAGTACTTGGATGCATGTGATGGAGCATTGTCCTGCATAAAGATCATGGCCTTCTTGAATGCTGAGGACTTCTTCCTGTACCACTGCTTGAAGAAAGATTCTTCCAGAAACTGGCAGTAGGTTTGGGAGTTGAATTTCAGTCCATCTTCAACCTGAAAAGGTCCAACTACCTCATTCTTAAAACAttttaaggctagggggcagtattcaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU44318 True 261 lncRNA 0.33 1 37017292 37017552

Neighbor

gene id symbol gene type direction distance location
trim44 LOC106573354 coding downstream 64321 36884472 ~ 36952971 (-)
ldlrad3 LOC106573355 coding downstream 190011 36712864 ~ 36827281 (-)
LOC118966750 NA coding downstream 376183 36641055 ~ 36641109 (-)
LOC100750228 irf-7 coding downstream 467290 36539797 ~ 36550002 (-)
LOC110522187 LOC106573361 coding downstream 608228 36370091 ~ 36409064 (-)
LOC110522309 LOC106573353 coding upstream 11333 37028885 ~ 37031653 (-)
LOC110522333 NA coding upstream 194868 37212420 ~ 37248824 (-)
pdhx pdhx coding upstream 270004 37287556 ~ 37347643 (-)
LOC110522348 LOC106573397 coding upstream 363016 37380568 ~ 37397634 (-)
LOC118966683 NA coding upstream 653297 37670849 ~ 37675533 (-)
G39194 NA non-coding downstream 16824 37000147 ~ 37000468 (-)
G39158 NA non-coding downstream 46628 36970448 ~ 36970664 (-)
G39030 NA non-coding downstream 228086 36762233 ~ 36789206 (-)
G38992 NA non-coding downstream 306587 36704524 ~ 36710705 (-)
G39231 NA non-coding upstream 8183 37025735 ~ 37026035 (-)
G39240 NA non-coding upstream 20953 37038505 ~ 37038867 (-)
G39270 NA non-coding upstream 44264 37061816 ~ 37062020 (-)
G39282 NA non-coding upstream 52916 37070468 ~ 37070678 (-)
G39284 NA non-coding upstream 53323 37070875 ~ 37071190 (-)
G38855 NA other downstream 506463 36508538 ~ 36510829 (-)
G38045 LOC106573386 other downstream 1295236 35721440 ~ 35722056 (-)
G37976 NA other downstream 1433684 35583292 ~ 35583608 (-)
G37907 NA other downstream 1575964 35440918 ~ 35441328 (-)
G40079 NA other upstream 698988 37716540 ~ 37717033 (-)
G40732 NA other upstream 1107728 38125280 ~ 38125725 (-)
G40768 LOC106573348 other upstream 1169936 38187488 ~ 38191736 (-)
G41868 NA other upstream 2004253 39021805 ~ 39022025 (-)
tspan9a LOC106573177 other upstream 6021176 42852829 ~ 43129052 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location