G55908 (LOC106561613)


Basic Information

Item Value
gene id G55908
gene name LOC106561613
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 51092732 ~ 51094575 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU62238
tggaacacacaTCGGGTGATAGTAACAGAGTCCCCAATACATATATTAACTAGCAGAAGTAAGAGATGAGGAAAACAGTAAATAGACAGGACAAGAGGAAAAAGCATCAAATGAAATAGGCAAGACTTGTCATAATAATAAACAGGGAGAAGGGAAAAACGACTACTTGAAGCATGCAATGCTTAACGTAAGGGCGTGGAAATACCATGCCAAGAGTGTTCTCTTTCTAGTGAatattgaaatacaaaaaaaagtgTACACCTAATGTCTCATCAGAATGGACAGTAATTCAGCACTATGGTAACAATGTAAACCATGTGGAAATGAATTAGCCTGTACCCAGATCTGTTTCTGGCATCTTGTCAACTCATTTTCATGCCAAACATATTGGCACCCAGAAGTGGGATTCGTGGAAAGAAAAAGCAGGTTAGTTTTCAACTGGCCCTCATACTCCGGGAATGTCCGTACTTATCTATCTAATGTATCTACATTGTACAGGTAGGCACATATATATAGATTTGAGGAAAGTCCATACAAGTGAATGACATAGGATgagtcccacatggcaccctattccctatatagcgcactacttttaaacaagagggccctggtaaaaagtaatgcactataaagggaatagggtgacatttgccATGCAGGCATGAACTATGACCCTTGACCTTACGTACGTGTGTTGGTGGTGAAATGGTGCTTAATTTCTTTAAACATGTATACAAAAAGGTGTCTTTCAGGATTTTTTTAGATCCGTTTCTATGCAATAACACGCTTTATTTAACAGGTCTCCaactcaaaaaaaataaaaaaatccaagTTGCAATGGAGTTTCAAGACTGCAAAGTCCCTCTCCTACCTTCTCTATCTGCATCAATAGGATCCACGTACCTTTTATTCACATATCTATTATAATACGCACTCTGTACATCTTCACATACACACGTCGTTTTTGGTGTGTGTTCTCCAATCACCGATGTCAAACTGGTGAAATTAAGTTGTGTAAAAAGTACCTTTCACTTTGTTTTCATACTAACGTAAAGATAATACAACTGGAAGAATTTAAATCAACTCCAGTCTTTGAGAAATGTGTAGACGTGTCCTTGCTGAATCGCTACCAAATTGTTCTTACGCATGACAAACATTGTGCGTGGTCGTCATATTATTATGCCCTTCCCACACCCAGGTCAATCACAAAAACATGAGATCCCTCTCAGAAGTACATCGGCAGTAAGTTCAACCTTCCTATATCGTCACAAATCCCATAAAATTCCCTCTGTAATGGCTGCCTCAGGGTAGTATTCTGACTTGAGATCCGCAAGCTTAACTCGGCTTTTCACGCAAGTTTCCCCATTGATGTCGTTGAATGATTTACGTGGAAATCCAAGGTACTTGGGCTTATCTCAACTCTGAATCGTTACCATCAGTAACCAGATGGATCCTATGCACAGCAGACAGATAATGAAGGACGCATAGATTGGGGTGGTAGTTGGGTCTAGGCCTAATCCGACTTATCCTTTTTCTTTGGTGTCACTTTACTGGCTACTGCGGACCCTACTGCTCCAACTCCTCCCGTCACCACGGAAACGCCCCCTTTGACTAATCCCACGCCGGCGGCCGGCACGCTGGTCACCACCGTCTTGGTGATGTCATAGCTCTTACAGCCCACCCAGGCCACGCCTCCCCATGTCGCGCCGACCGCCCCTCTGGTCATGTTGAAGAGACCGCCGGTCACCCTCCAGATGACCCCCGCCTCGGTCTTAGGGT

Function

NR:

description
PREDICTED: transmembrane protein 263-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62238 True 1782 lncRNA 0.43 3 51092732 51094575

Neighbor

gene id symbol gene type direction distance location
LOC110524544 LOC106573154 coding upstream 17287 51071696 ~ 51075445 (+)
LOC118964313 NA coding upstream 99613 50991983 ~ 50993119 (+)
c1h11orf49 cssa16h11orf49 coding upstream 221385 50856580 ~ 50871347 (+)
LOC110524496 LOC106573105 coding upstream 292352 50792196 ~ 50800380 (+)
LOC110524482 LOC106573107 coding upstream 418557 50600635 ~ 50675495 (+)
LOC118964319 NA coding downstream 59932 51154507 ~ 51155396 (+)
acte1 LOC106561611 coding downstream 69502 51164077 ~ 51170344 (+)
shank2b LOC106573098 coding downstream 120255 51214830 ~ 51342260 (+)
LOC110524569 LOC106573096 coding downstream 263713 51358288 ~ 51424303 (+)
LOC110524575 fgf3 coding downstream 354778 51449353 ~ 51451460 (+)
G55731 NA non-coding upstream 140770 50951733 ~ 50951962 (+)
G55690 NA non-coding upstream 200848 50890764 ~ 50891884 (+)
G55664 NA non-coding upstream 240128 50852281 ~ 50852604 (+)
G55115 ckap5 non-coding upstream 275284 50810146 ~ 50817448 (+)
G55101 NA non-coding upstream 313163 50777910 ~ 50779569 (+)
G55963 NA non-coding downstream 81059 51175634 ~ 51194020 (+)
G56152 NA non-coding downstream 144755 51239330 ~ 51239638 (+)
G56156 NA non-coding downstream 151383 51245958 ~ 51246251 (+)
G56162 NA non-coding downstream 160776 51255351 ~ 51255644 (+)
G56185 NA non-coding downstream 194534 51289109 ~ 51289512 (+)
LOC118964841 NA other upstream 1008736 50037523 ~ 50184257 (+)
G53181 NA other upstream 2198820 48893497 ~ 48893912 (+)
G52324 NA other upstream 2709475 48380542 ~ 48383257 (+)
G52080 NA other upstream 3067774 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 3833834 47227246 ~ 47260224 (+)
LOC118936380 LOC106581842 other downstream 2571640 53632830 ~ 53705421 (+)
G59031 NA other downstream 2893565 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 2950274 54044813 ~ 54089850 (+)
G59963 NA other downstream 3626613 54721188 ~ 54721463 (+)

Expression


Co-expression Network