G55731


Basic Information

Item Value
gene id G55731
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50951733 ~ 50951962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU62060
GCTATATGCGTACCTCAGCCTGAGAGATTTGCCCAGCACATTCTTTGACTTCCTTTTTCACGTTGTCCACTGCAGACAGTACATTTTCGAATTTAATAGAGAATTCtgcattcatatttttgatgGCCTTGAGGATATATTCGTAGCTAACGTCACTGCACGTGTTTATCGCCTCAGTCCTGCTTCCACCACTAGCACATGAAGCTAGCACAGCACCTTCATCCTCACTC

Function

NR:

description
LINE-1 type transposase domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62060 True 230 lncRNA 0.44 1 50951733 50951962

Neighbor

gene id symbol gene type direction distance location
c1h11orf49 cssa16h11orf49 coding upstream 80386 50856580 ~ 50871347 (+)
LOC110524496 LOC106573105 coding upstream 151353 50792196 ~ 50800380 (+)
LOC110524482 LOC106573107 coding upstream 277558 50600635 ~ 50675495 (+)
LOC110524456 LOC106573106 coding upstream 358882 50530648 ~ 50592851 (+)
LOC110524453 LOC106573109 coding upstream 441942 50455556 ~ 50509791 (+)
LOC118964313 NA coding downstream 40021 50991983 ~ 50993119 (+)
LOC110524544 LOC106573154 coding downstream 119734 51071696 ~ 51075445 (+)
LOC118964319 NA coding downstream 202545 51154507 ~ 51155396 (+)
acte1 LOC106561611 coding downstream 212115 51164077 ~ 51170344 (+)
shank2b LOC106573098 coding downstream 262868 51214830 ~ 51342260 (+)
G55690 NA non-coding upstream 59849 50890764 ~ 50891884 (+)
G55664 NA non-coding upstream 99129 50852281 ~ 50852604 (+)
G55115 ckap5 non-coding upstream 134285 50810146 ~ 50817448 (+)
G55101 NA non-coding upstream 172164 50777910 ~ 50779569 (+)
G55058 NA non-coding upstream 177340 50701597 ~ 50774393 (+)
G55908 LOC106561613 non-coding downstream 140770 51092732 ~ 51094575 (+)
G55963 NA non-coding downstream 223672 51175634 ~ 51194020 (+)
G56152 NA non-coding downstream 287368 51239330 ~ 51239638 (+)
G56156 NA non-coding downstream 293996 51245958 ~ 51246251 (+)
G56162 NA non-coding downstream 303389 51255351 ~ 51255644 (+)
LOC118964841 NA other upstream 867737 50037523 ~ 50184257 (+)
G53181 NA other upstream 2057821 48893497 ~ 48893912 (+)
G52324 NA other upstream 2568476 48380542 ~ 48383257 (+)
G52080 NA other upstream 2926775 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 3692835 47227246 ~ 47260224 (+)
LOC110524575 fgf3 other downstream 497860 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 2714253 53632830 ~ 53705421 (+)
G59031 NA other downstream 3036178 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 3092887 54044813 ~ 54089850 (+)
G59963 NA other downstream 3769226 54721188 ~ 54721463 (+)

Expression


Co-expression Network