LOC110524453 (LOC106573109)


Basic Information

Item Value
gene id LOC110524453
gene name LOC106573109
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50455556 ~ 50509791 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604100.2
TCTTGAGTTTGTTTCGCACAACACTACACCGGCAGTATAGGACCAGAGACGCAACACGAGTGATGATGTCTCCCCCGTGCATGTGCTTCTGTCACAATTTCATTCCTTGAGACGCTTCTTTCCGAAAAATACCAACATCTGAATTTCACAGAAGACGAATCTATACTAAAGGCATTTTGTGACAATGAAGAAATAAACAACTCCTTCTCAACCCTCCATCACAAACCTCCAAGACAGATACTTTATACAACCCCTGACAGACCATCTCTAAGCCCTTGCCTTGTGCAGACACTACCCGGATCTCAGAATAACTACCAGAACTGCACTGCTCCCACACCCCTCCCGCAACTAGCCCAAAGACATTCCACCCCTCGCCCTGGTCTGCTTTATCAAATGCCCAAAAACAGCAAGGCCGTCAAGAGAGAGCTTGACGATGATGTCAGGGAGTCCGTCAAAGACCTGCTATCCAACGAGGACACTTGTGATGATTCCTTTAAGAAGAGCTCGCTGATCGTGGGAGGTGGCAGAGGTGATGGGGAAGGGAAGGAGCTTAGCCTCAACGGAGACATGGACGTGGAGGACGAAGGCTCGGACGCAGAAGATGATGCAGCGAGGCCAGCCTGGAACAGCAAGCTGCAGTACATCCTGGCCCAGGTGGGCTACTCTGTAGGCCTGGGCAATGTCTGGAGGTTCCCCTACCTGTGTCAGAAGAACGGAGGGGGGGCCTACCTGGTGCCCTACCTGATCCTTCTGATTGTGATTGGCATCCCCCTGTTCTTCCTGGAGCTGTCAGTGGGGCAGCGGATCCGCAGGGGCAGCATCGGGGTGTGGAACTACATCAGCCCTCGTCTGGGGGGCATCGGGTTTGCCAGCTGTGTGGTGTGCTTCTTTGTGGCCCTCTACTACAATGTGATCATTGGGTGGAGTCTCTTCTACTTCTCCCAGTCCTTCCAGCAGCCTCTGCCATGGCACGAGTGTCCCCTGGTCAAGAACAAAACCACAAtgtttGTGGTGCCTGAGTGTGAAAAGAGTTCGGCCACCACCTACTACTGGTACCGTGAGGCTTTGAACATCTCTGACTCCATCTCTGAGAGCGGAGGCCTCAACTGGAGGATGACCATCTGTCTGCTGGCCGCCTGGTCCATGGTCTGCCTTGCCATGATCAAGGGCATCCAGTCCTccgggaagGTGATGTACTTCAGCTCGTTGTTTCCCTACGTAGTGCTGATCTGTTTCCTGGTCAGGGCTCTGCTCCTCAAGGGATCCGTGGATGGGATCCGACACATGTTCACACCCAAGTTGGAGATCATGCTGGAGGCCAAAGTGTGGCGCGAAGCGGCCACACAGGTCTTCTTCGCCCTGGGCCTGGGCTTCGGAGGGGTCATAGCCTTCTCCAGCTACAACAAACGGGATAACAACTGTCACTTCGACGCAGTGCTGGTCTCCTTCATCAACTTCTTCACCTCTGTGTTGGCCACCCTGGTGGTATTCGCCGTGCTTGGCTTCAAGGCCAACATCATGAACGCCAAGTGTGTTGCACTGAACACAAAGAAGATAGTTGCTTTGCTAGGGAATGAGGTCAGCCACGACCTGATCCCCCACCACATCAACTTCAGCGCTACTTTGAGTGCTGAGGACTACCAACAGCTGACGGAGATCCTCAGAGGGGTGACGGAGAAGGATTACCCGCGCCTGGGCCTGGACTCCTGCAGCATCGAGGAAGAGCTCAACAAGGCAGTGCAAGGTACAGGCCTGGCCTTCATCGCCTTCACAGAGGCCATGACCCACTTCCCTGCATCTCCCTTCTGGTCCGTCATGTTTTTCCTCATGCTGGTTAACCTGGGCATGGGCAGCATGTTTGGTACCATCGAGGGCATCATCACACCTTTGGTCGACACCTTCAAAGTCCGCAAGGAGTTCCTCACAGTGGGTGTCTGTCTGCTAGCCTTCTTCATCGGCCTGCTGTTCGTCCAACGATCTGGGAACTACTGGGTGGCCATGTTTGATGACTACTCTGCCACACTGCCCCTGCTCATAGTGGTCATCCTGGAGAATGTGGCTGTTGCTTGGGTCTACGGGACTGACAAATTCTTTGAGGACCTGAAGGACATGCTGGGCTTCACTCCATTTCGGTTCTACTACTACATGTGGAAGTACGTGACCCCCCTGCTGCTCATCCTTCTGCTGGGCTCCAGTGTGATCCAGCTGGGAATGACCCCACCCAGCTACAGTGCCTGGCTAGAGGACATGGCCAGTGAGAAGTCCCTTAAATATCCCCCTTGGGGCCTGGCGGTCTGCATCTCCCTGGTGGTGATGGCCATCATGCCCGTGCCCGTGGTCTTCTTCCTCCGCTACTTCAACATCATCGACGAGAACGCTGGCGTGGTGTCCACCATCTCCTACAAAAAGGGCTGCATCATCAAGGAGAGCGTCAGACCCGAGGAGGACGATGATGCCAGCCTCATCCACGCCAAGTCGCCCGGCAGCGAAGCGCCATCTCCCATGCCTGGCAACAGCATCTACCGTAAGCAGAGTGGAGGGGTCCCCGATGCCGCACCCAACGGCCGCTACGGCATCGGCTACCTGATGGCTGACATGCCAGACATGCCCGAGTCAGACTTATAGAGCGACTTGTAGGGCGATGTCTATGGTCCTCCCACCCTACTGGCTGGCCAACCAATCGCTCTTCATTGTGTTTAGTCATGGGAATCATCATCTGCATATTTTTATTTGTAGTGTTTCAGTATATTCTTTGTAGTTATCGTAGCTGCTCCCCTTCATGTTTTCCTCGTCCCCTTTTGCCGTGAAAACGATTAAAAAGATGTGTCCACTGTACATATTATCTCCTTTTGTCTTCCCCACCCAGTTGCTCCTTGGCTCAGTCCCAAATATACCCTCTCTAGCTCCCAGTCCCGGAGACCTTGTTGACCCCCTagtggacagaacaggacagtattggTGTAAGCAATAAGGTGGAATCAAACTCCACCAAGGCTACTAATAGTGCTAGGCAGGATAGGTGTGAATTCAATTCTGTAAATTCAGTAAGTAAACTCAAATGAAAATGGTCTTTATTGCTTCTCTATGAAAACAACAGTGAATTTGAATTTCTGTCTACTGTCTGAATTGATTGAATTGAAATGGACTTACCCCAAACCTGATTCTAGGCTCTGCCAGGGAAAGTCAACAAGGGTCATAGGCTATGTATGGACCAGtgagggttccatttgggactggAGCTTCTGTCCACAGTAtgtcccacccccacccccacccccaccccccccactggCTGTGTACATTATGACTTCACCACTGGCCCAGAGTACTGAGATTAGTAGCAGTGTAGGTGTTTTGGATGACATACTTGTTGACAATGATGCTATGCTGACCACATTTCCTTGATGTAAGTACAATATAGTGCAAACAGCGAAAGGATGGCATTGAaactgaaccccccccccatgATTGATCTAAAAGAAAATGTGTGCCTAAATAACTTCTGAtgactggggcggcaggtagtctagtggttagagtgttggactagtaaccgaaaggttggaagGTCAAAtcctgttctgcccctgaacaaggcagttaacccactgttcctaggcagtcattgaaaataagaatttgttcttaactgacttgcctagtaaaataaatatgtTTATAGAATACATGGTGAACATTGTATATTTAAGGTATTCTGTAAATATAATATAgaaatattataaatatatttatcTGAATAGTTTGGATATCAGAACACCTTGTTTTTTGGTAAGAAGTGCTACAAATCCTTAACTCTGGTCTCTTTTTTTGTTTACTGATGTGCTGTCGGTCTATGTAAAGAGTTTGACTCCTCTTGATAACTTGTAAATACTTTTTTCCATGAAATGGCTTCAAAAcacaatgtatttttttccctTTCGAGATTAAAGATCAAACTTGGTCCATGCTTGGCA
>TU61134
CAACACTACACCGGCAGTATAGGACCAGAGACGCAACACGAGTGATGATGTCTCCCCCGTGCATGTGCTTCTGTCACAATTTCATTCCTTGAGACGCTTCTTTCCGAAAAATACCAACATCTGAATTTCACAGAAGACGAATCTATACTAAAGGCATTTTGTGACAATGAAGAAATAAACAACTCCTTCTCAACCCTCCATCACAAACCTCCAAGACAGATACTTTATACAACCCCTGACAGACCATCTCTAAGCCCTTGCCTTGTGCAGACACTACCCGGATCTCAGAATAACTACCAGAACTGCACTGCTCCCACACCCCTCCCGCAACTAGCCCAAAGACATTCCACCCCTCGCCCTGGTCTGCTTTATCAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604100.2 False 3974 mRNA 0.50 12 50455556 50509791
TU61134 True 376 lncRNA 0.47 2 50455574 50457681

Neighbor

gene id symbol gene type direction distance location
LOC110524434 LOC106573111 coding upstream 224491 50226356 ~ 50231065 (+)
LOC118964841 NA coding upstream 372016 50037523 ~ 50184257 (+)
LOC118964840 NA coding upstream 606577 49847620 ~ 49848979 (+)
LOC110524421 NA coding upstream 621553 49823910 ~ 49834003 (+)
kitlg scf coding upstream 752598 49666532 ~ 49702958 (+)
LOC110524456 LOC106573106 coding downstream 20857 50530648 ~ 50592851 (+)
LOC110524482 LOC106573107 coding downstream 90844 50600635 ~ 50675495 (+)
LOC110524496 LOC106573105 coding downstream 282405 50792196 ~ 50800380 (+)
c1h11orf49 cssa16h11orf49 coding downstream 346789 50856580 ~ 50871347 (+)
LOC118964313 NA coding downstream 482192 50991983 ~ 50993119 (+)
G54907 NA non-coding upstream 25959 50429239 ~ 50429597 (+)
G54906 NA non-coding upstream 26651 50428578 ~ 50428905 (+)
G54902 LOC100194703 non-coding upstream 30517 50424474 ~ 50425039 (+)
G54901 NA non-coding upstream 31301 50423931 ~ 50424255 (+)
G54900 NA non-coding upstream 31640 50423620 ~ 50423916 (+)
G55023 NA non-coding downstream 130769 50640560 ~ 50640778 (+)
G54987 NA non-coding downstream 167547 50677338 ~ 50678112 (+)
G55058 NA non-coding downstream 191806 50701597 ~ 50774393 (+)
G55070 LOC106573111 non-coding downstream 208891 50718682 ~ 50720223 (+)
G53181 NA other upstream 1561644 48893497 ~ 48893912 (+)
G52324 NA other upstream 2072299 48380542 ~ 48383257 (+)
G52080 NA other upstream 2430598 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 3196658 47227246 ~ 47260224 (+)
LOC110524575 fgf3 other downstream 940031 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 3156424 53632830 ~ 53705421 (+)
G59031 NA other downstream 3478349 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 3535058 54044813 ~ 54089850 (+)
G59963 NA other downstream 4211397 54721188 ~ 54721463 (+)

Expression


Co-expression Network