kitlg (scf)


Basic Information

Item Value
gene id kitlg
gene name scf
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49666532 ~ 49702958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578809.2
AAAGCCTTCAACTCacaatagtctcccagtccactTTCATGCGCACGCTATGATGTGTGGATACCATACAACAGAGCTTATTGCAGAAGTTTTATGCGGTTTAATATTTTTTTCCCGGTTTGGATACTACTGACTGGGGCATTGGATATGTGCACACGGGATGATGAAAACCCCTTTCCTCCCCGCAGAAGTAAGATAAAATAGGGTTTCGAATACATTGGATTTACTCCTCTCGTTCCATATGAAGAAGTCAAAAATTTGGATACGCATCTGTGTCCATTTATTGGTGTGCACCACATTTGGAGTTCACTCAAGTGAATTTGGAGATGCTGTAACAGATGAcatcacaagcatttcactattgAAACAAAATATACCTAAAGATTACAAGATTCCTGTGACATATATTCCAAAAGAAGTGGGTGGAATGTGTTGGGTCACACTAAATGTTTTCCACTTGGAACTCAGTTTACGAGGATTAGCAGACAAGTTTGGAAACATTTCATCCAACAAATATAATATCAGCATATTGATCGAAATGCTGAAAGAGACGCGATATCACATGAAGAACTTGGAGGTGATCACGTCTGATTTTGAGTGCCACTATAGAGACGAGAAATGGCAGACAGGACACTATTTTCAGTTTGTTGAAGATTTTCTAAACACGGCCCGTTCGAATAGAGATTCGCCAGAAGAATGCGATCCACCTCCCtgtccaacaacaacaaaggCATCAGCAACTACAAtaacaacacaataccccacatcAGGGAAAGAGCCTCTGAGGTTCCTGCCAGAAGTAGTGGAGAGAAGCCTCCTGTCACTACTTGTAATTCCTATTGCGGCCATCGTGTTTCTGTTTGTGTGGAAGGTGAAATCCAGGAGCAACCAACATCAATCAGATGAACTGAAATCAGTGGAAGGAGGCCTCTTCACAGGAACAGAAGAGAGTTTGGCACCTCCACTAGATGACATTTCTGAAAAGAACCGATTGAACATCATTGAGGCAGTGTAATTGTTCAATCCTTGGAAATTGgtgTACAGAGGAGTCATCTAAGAAAGAGCGAGCAAACATAAAACTACATTTCTTACGGTGAAAGACTTGCTTCTTTCATGTCCAGAAACTGACAGTCTTCTCGTACCAGAACCAGATAATGGCACACAAAAATGTGCTGTCTTATCACTCCTGCAATAAGCTGGGAGTTGTTCTTGCGAGAGTATATTAACCTGTCATCTACTATCAAATTTCATCAAATGAAGCTGAAAAGGAGAGTGTGATTCTCATGGAAACATCTGGAGATTCCAATAACTGTTCAAAACACAGTGAACTTCACGGGACAATGTTGATTTCACAAGCACTCCCCCGTTTGCACTTTTTGTAGGTTTGGCTGGAGCATGGACACTGGTTCTACTCAAGAACGCAGCATAGAACAAACACCTATAAATGGCTTTCTTTCATTAGGACTGAAGCATAAATGACTACCTCTAGTCGCCCTGCCCTCACTTTCCTCAACTTCTTCTCAGCAGCATTCCACTCCACTTCCTTCTCCATCTTGGTTTCCATTGGACGTTCCCTGAGAATCTATTTTGAAATGAGTTATCTAGAAATATTCTCAGATTTAACCATCTGTTTTATTTGATGTTTTTGGCTATGTACGTACGGAAGGGATGAGGTTGTgcgatgtatttatttatttgcttaCTCGGAATGCTGACAGCATAATATTGCTGCAGTTGGAGAAAGAAACTGTCAGTGATTCAGCTCATCTATAGAAATACTAAATGAGCAGGAAAAGGTCTACGAGGGTGGTTTATAAAGACTACATAACTCATTATTCTGCAATGCATAAAGCCTCCTTAAACAGCACACTGGAATCTATAAACACATGCGTTATCTATATTAAGACAGCCATAGAATGATGTATGTATGATGGTGTTGTTAATTGCTTATGAATGGATTGTATGAAAGGCTTTTGTTGGAgttgtaaatgtaaaaaataatgtgCTACTTTGACTAACTTTCATTTATCCCATTATATACAGTAAAAAATGATTGTCCCTATAGCAATCAATGGTAGATCAAGGGTAAATCTTACATATCCATATTGATTTAGATCAGACATTGAGGATCTGATAACGCAAGGTTTTTCTATGCCCTCAATGCACAAGAAAGAGGTGGTCTAGCCTCAAGTAAACCAGTTTTGCATCAGATTCTGCAATTACATTATAACTCCGCTCTGGTATGTTGCAGCCTCACCACCCATAAGGTATATTATGTATGTTGCATGTACACAGCTGTACAGTTTAACAATGTGTTAAAGTGGTTCAAAGCTATGAATTGAAATTGAGCCAAGAAACATTTTTACTTGAACAATATACTTGTCACTCCAGTAACCAAGTACCCTAATGAATTGTGTTCCAAATAACCTTCAGTAACCTATACAGAAagtgagcaaaaaaaaaaatatttctgagGTAACAATATTACAAAATGTTCTTAACACGCACGTCAAAAGCCAGAATATATCAAAGTTGGTAGAGGACCAGACTCTAAAATTCACCATTGTTTAGAAAAGTGATATGATCTGTGAGGACAGTGTCTAGCAGTTTATCCACTGTCTATCAAATCGTGTGGTACTCTTGTTGTATTCAGCAACTCAGGCTACGATATTGCAGAATAATTATGAAGATTAGTCTGATAAAAGTCGGGTCCGCAGTCATGGCCATCATTCTATTATACCCAAAATGTTTTGTATGACATTTCACCAACTCATCAGGAGACTACTAAGAATTGAGGCAAACCGTTTT
>NM_001281361.1
TCacaatagtctcccagtccactTTCATGCGCACGCTATGATGTGTGGATACCATACAACAGAGCTTATTGCAGAAGTTTTATGCGGTTTAATATTTTTTTCCCGGTTTGGATACTACTGACTGGGGCATTGGATATGTGCACACGGGATGATGAAAACCCCTTTCCTCCCCGCAGAAGTAAGATAAAATAGGGTTTCGAATACATTGGATTTACTCCTCTCGTTCCATATGAAGAAGTCAAAAATTTGGATACGCATCTGTGTCCATTTATTGGTGTGCACCACATTTGGAGTTCACTCAAGTGAATTTGGAGATGCTGTAACAGATGAcatcacaagcatttcactattgAAACAAAATATACCTAAAGATTACAAGATTCCTGTGACATATATTCCAAAAGAAGTGGGTGGAATGTGTTGGGTCACACTAAATGTTTTCCACTTGGAACTCAGTTTACGAGGATTAGCAGACAAGTTTGGAAACATTTCATCCAACAAATATAATATCAGCATATTGATCGAAATGCTGAAAGAGACGCGATATCACATGAAGAACTTGGAGGTGATCACGTCTGATTTTGAGTGCCACTATAGAGACGAGAAATGGCAGACAGGACACTATTTTCAGTTTGTTGAAGATTTTCTAAACACGGCCCGTTCGAATAGAGATTCGCCAGAAGAATGCGATCCACCTCCCtgtccaacaacaacaaaggCATCAGCAACTACAAtaacaacacaataccccacatcAGGGAAAGAGCCTCTGAGGTTCCTGCCAGAAGTAGTGGAGAGAAGCCTCCTGTCACTACTTGTAATTCCTATTGCGGCCATCGTGTTTCTGTTTGTGTGGAAGGTGAGCTGTTCTTTGACACTAAGGACCTGCAACTTAAAACCTGACTGTTGGCAATTGTCAATCTCTTTGATTGCAAGTACATTTTTTGGTCTTTGATGGTTGTTTGTCTGTGACTGTGGGTGTTTCTTTCCCAGTAACTAACTGCTACTTTGACTTCTCTTTTGTATTTTTGTTAGGGAATTTtactttgtttgtgtttgtgggttAACATGGGTTTCATTGGTGTTTTAAGGTCCAACGCAACCTTTTTTAAATATGAAATAATTTCTGGTTAACAATTAAATACGTttctgtgattgttttaaatgaaaatagtaacaaataaacaaaaatagcttttta

Function

symbol description
scf Predicted to enable calcium ion binding activity. Involved in chromosome organization; positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity; and regulation of gene expression. Located in cytoplasm; nucleus; and polytene chromosome puff. Is expressed in several structures, including circulatory system; embryonic/larval digestive system; embryonic/larval fat body; extended germ band embryo; and yolk nucleus. Orthologous to several human genes including CALU (calumenin).

NR:

description
kit ligand precursor

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0005173 stem cell factor receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578809.2 False 2808 mRNA 0.39 9 49666532 49702958
NM_001281361.1 True 1201 mRNA 0.39 6 49666544 49700375

Neighbor

gene id symbol gene type direction distance location
LOC110524405 LOC106573116 coding upstream 226300 49435762 ~ 49440232 (+)
LOC110524349 LOC106573123 coding upstream 851519 48804907 ~ 48815013 (+)
LOC110532376 NA coding upstream 868028 48759039 ~ 48798504 (+)
cttnbp2 cttnbp2 coding upstream 959963 48635495 ~ 48706569 (+)
LOC110524313 LOC106573128 coding upstream 1069924 48591020 ~ 48596608 (+)
LOC110524421 NA coding downstream 120952 49823910 ~ 49834003 (+)
LOC118964840 NA coding downstream 144662 49847620 ~ 49848979 (+)
LOC118964841 NA coding downstream 334565 50037523 ~ 50184257 (+)
LOC110524434 LOC106573111 coding downstream 523398 50226356 ~ 50231065 (+)
LOC110524453 LOC106573109 coding downstream 752598 50455556 ~ 50509791 (+)
G53899 NA non-coding upstream 80666 49554714 ~ 49585866 (+)
G53872 NA non-coding upstream 150452 49515610 ~ 49516080 (+)
G53817 NA non-coding upstream 241891 49424385 ~ 49424641 (+)
G53811 NA non-coding upstream 246743 49419588 ~ 49419789 (+)
G53790 NA non-coding upstream 272463 49393851 ~ 49394069 (+)
G54041 NA non-coding downstream 90289 49793247 ~ 49796208 (+)
G54472 NA non-coding downstream 219413 49922371 ~ 49922630 (+)
G54476 NA non-coding downstream 221212 49924170 ~ 49924397 (+)
G54481 NA non-coding downstream 223961 49926919 ~ 49927144 (+)
G54507 NA non-coding downstream 243649 49946607 ~ 49946846 (+)
G53181 NA other upstream 772620 48893497 ~ 48893912 (+)
G52324 NA other upstream 1283275 48380542 ~ 48383257 (+)
G52080 NA other upstream 1641574 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 2407634 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 2805068 46854230 ~ 46861465 (+)
LOC110524575 fgf3 other downstream 1746864 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 3963257 53632830 ~ 53705421 (+)
G59031 NA other downstream 4285182 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 4341891 54044813 ~ 54089850 (+)

Expression


Co-expression Network