G54476


Basic Information

Item Value
gene id G54476
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49924170 ~ 49924397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU60729
gcggagtgcctggatacagcccttagccgtggtattttggccatataccaaaaacccccgaggtgccttattgctattatgaactggttacaaatgttttgtcatacccgtggtatatggtatGATATACCATagatgtcagccaatcagcattcaggactcgaaccacccagtttataattgaaATTGTGGGGCCGGTCTTTCACTAGTATAACCACACATTTATAC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60729 True 228 lncRNA 0.43 1 49924170 49924397

Neighbor

gene id symbol gene type direction distance location
LOC118964840 NA coding upstream 75191 49847620 ~ 49848979 (+)
LOC110524421 NA coding upstream 90167 49823910 ~ 49834003 (+)
kitlg scf coding upstream 221212 49666532 ~ 49702958 (+)
LOC110524405 LOC106573116 coding upstream 483938 49435762 ~ 49440232 (+)
LOC110524349 LOC106573123 coding upstream 1109157 48804907 ~ 48815013 (+)
LOC118964841 NA coding downstream 113126 50037523 ~ 50184257 (+)
LOC110524434 LOC106573111 coding downstream 301959 50226356 ~ 50231065 (+)
LOC110524453 LOC106573109 coding downstream 531159 50455556 ~ 50509791 (+)
LOC110524456 LOC106573106 coding downstream 606251 50530648 ~ 50592851 (+)
LOC110524482 LOC106573107 coding downstream 676238 50600635 ~ 50675495 (+)
G54472 NA non-coding upstream 1540 49922371 ~ 49922630 (+)
G54041 NA non-coding upstream 127962 49793247 ~ 49796208 (+)
G53899 NA non-coding upstream 338304 49554714 ~ 49585866 (+)
G53872 NA non-coding upstream 408090 49515610 ~ 49516080 (+)
G53817 NA non-coding upstream 499529 49424385 ~ 49424641 (+)
G54481 NA non-coding downstream 2522 49926919 ~ 49927144 (+)
G54507 NA non-coding downstream 22210 49946607 ~ 49946846 (+)
G54532 NA non-coding downstream 41687 49966084 ~ 49966283 (+)
G54537 NA non-coding downstream 44435 49968832 ~ 49969034 (+)
G54571 NA non-coding downstream 62995 49987392 ~ 49987606 (+)
G53181 NA other upstream 1030258 48893497 ~ 48893912 (+)
G52324 NA other upstream 1540913 48380542 ~ 48383257 (+)
G52080 NA other upstream 1899212 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 2665272 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 3062706 46854230 ~ 46861465 (+)
LOC110524575 fgf3 other downstream 1525425 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 3741818 53632830 ~ 53705421 (+)
G59031 NA other downstream 4063743 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 4120452 54044813 ~ 54089850 (+)

Expression


Co-expression Network