LOC110524434 (LOC106573111)


Basic Information

Item Value
gene id LOC110524434
gene name LOC106573111
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50226356 ~ 50231065 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021604059.2
GTCTATAGGCCGAGCCCGTCTCATGAACTATATGTTCCATCTCAACTTGTTGCTACACAGCTTGATAATGTACCTTTCCACCTGTGTTTCCCTGCAGATCCCAGTGAGAGTGTCTCCATCATGAGGCTGGTGTGGAAGTCCTTGGACAAGATGAGGTGTTTCCGTAAACGCTCCACCATCCCCTTCCTGGGGTTCCTGATCACCTGTCTACTCTTCCTCAATCTGTACATTGAGGATGGGTATGTGCTGGAGGAGGACAAAAGGCAACTGAGAGAAACGTCCATGCATCCTTCAAACTCTGAGAGATATGTTCACACCTTTAGAGAGCTCACAAATTTCTCTGGAACCATAAACGTCACATATCGTTACCTCGCCGGAACCCCTTTGCCTCGAAAGAAATATCTAACCATTGGACTGTCGTCCGTCAAAAGAAAAAGAGGGAATTACCTCATGGAGACGATCAAATCCATTTTCGACCAGTCCAGTTATGAGGAGCTGAAAGAGATTGTGGTGGTGGTTCACCTGGCGGACTTTGACCTGGCCTGGTGTGAAAACCTGGTGCAGGACATCTCCAGGAAGTTTGCCCACCACATCATCGCTGGACATCTCCTGGTGATCCATGCCCCTGAGGAGTACTACCCATCACTGGATGGGCTGAAAAGGAACTACGACGACCCAGAGGACAGGGTACGCTTCCGCTCCAAGCAGAATGTGGACTACGCCTTCCTCCTCAACTTCTGCACCAACCTCTCAGATTTTTACATGATGCTGGAGGACGATGTGCTCTGCTCAAGGAACTTCCTGACATCCCTGAAGAAGGTGGTCACCTCCAGGGAAGGCTCCTACTGGGTGATGCTGGAATTCTCCAAGCTTGGCTACATAGGGAAGCTCTACCACTCAAGAGACCTTCCGCGCCTGGCCCACTTCCTGCTCATGTTCTACCAGGAGATGCCTTGCGACTGGCTCCTTATTCACTTCCGGGGCCTGTTGGCCCAGAAAGATGTGATCCGCTTCAAGCCCTCTCTGTTCCAGCACATGGGTTACTACTCCTCATATAAGGGAGCAGAGAACAAGTTGAAGGATGATGATTTTGAAGAGGACTCTATTGATATCCCTGACAACCCTCCTGCCAGCCTGTACACAAACATTAATGTATTTGAAAACTATGACGCCACCAAGGCTTATAGCAGTGTGGACGAATACTTTTGGGGGAAACCCCCCTCTACCGGAGACTTCTTTGTCATAGTATTTAACAAATCAACTAAAATAAGCAAAATCAAAATCTTGACAGGAACGGACGATCGTCAGAATGATATCCTGCACCATGGAGCTCTGGAAGTAGGAGAGAAGCTGGTGGGGACAAAGAGAGGAAGGCAGTGTTCTTCCTACATCACGTTAGGGGAGTTTAAAAATGGCAACATTGACGTTCAAGACGTGGACCACAAGATTGCCTTTGCCATTGAGTGTGTTCGTATTGTGGTGACTGCCAGTCAGAAAGAATGGCTGATTATTAGGAGTATAAGCTTGTGGACTACACAACCCCCCAGTCAATGAGAACAACACAAAAACTATCATCATACCATGTAGGCAACAGTTGGTTTACTAATTCATTCGATAATGTATTCATTTATTTACGTATTAATGTATGTATTTATTGTTGCATGTGTTAATTTATTTAATGATTTATTTTacccattttatttatttaattttatagTACATGTATTTATATTTGTATCTACAAATCAATCTAGAGTTTTTATATTTGAAAGTATGCTTTAATGCTTTTTACAATTATGGAAAAATGTTTAATGATTGTCTGACTAACCACTTTTATGGACGTTGAACCGTTTTTATGGATGTGAGATCATGGGAAATATCTGTTGGCTATTGTACTCATGTTGTACatcttattattatttatatttctcaGTGTCTTTCCACATCAAAAGTAGCCTCTGGGTCCTCTGGACTTGAACAGTGGTGATTAAGAAATTACACGCCTGCAGACAATTATAGACTTAGGAACATAGCATTACTCCAAATGTTCTTGCTATCAACAAATAGCCACATTCACCCCTTTCCAAAGTTATCATCATCCTTTACATCTTACCCTACAAGCATTATGACGGTCATTATGTCTGCGAATATCCATTCCATCCCTCCTATTCAGGCTGGCGTGGTGTTAGAGAGTTGGAGCGAGCTCTGCAAATGTATTTCCCTGGCACTGTATGTTCCATCAGAGCCGCTGACAGGAGAACAATGTTTGTTTTCACCCATCTTCTCTAACATCTCAGATTGGAGCACACAGTAAGGAATGGGGTGGAACTGATAGTTGACATTTTTTTTGTCACCACAGCACACTTTTACCGGAGTAACGGTCTGTGTTAGGAGCGCTCTCTGCTCGCTACACCAGCAAACAACAACACCCCTGGAGCTAGGGTCTCAAGTAAATTCACTCTCTTTTCCCAATGATGTGCTCTCAGGCACTAAAGGATCTTCTCTTAGAATGTTTCTGTAATATAGAAACAAATCAACTTTATTTACTCTGTGTGGTAACCGTGGGCCATGGTATactaaaatcaaattgtatttgtcacacgcatcgtagacaacaggtgtagactaccaatgaaatacttacttactggtccatttccaacaatgcagagttaaagacaagattttttttaaataaaaatagtgacacgaggaataaatacacaatgaaataACAAATACGAATAAAGAGTAaacataacatggctatatacaggaagtagaacataacatggctatatacaggaagtagaagatatcatggctatatacagggagtaccagtaccgagacGATGTTCAGGGATaaaaggtaattgaggtagcttcagaatgtactgtactgtacatatacagtgccttcggaaagtattcagacaccttgactttttttcCACCTTtttttaggttacagccttattctaaaatggaatcaattgtttttttcctcaatctatacacagtaccccataatgacaaagcaaaaatatgtttgtagaaattttggcaaatgtataaaaagaaaacagtttgaaatactacatttacataagtaccctttactcagtactttagaTGCTTTTTGGGAAACTCGAAGCGGGCAGTCATGTGctttttaatgaggagtggcttccgtctggctactctaccataaaggcctgattggtagagtgctgaagtgatggc

Function

NR:

description
alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K13748 MGAT4C; alpha-1,3-mannosylglycoprotein beta-1,4-N-acetylglucosaminyltransferase C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021604059.2 True 3245 mRNA 0.42 3 50226356 50231065

Neighbor

gene id symbol gene type direction distance location
LOC118964841 NA coding upstream 142816 50037523 ~ 50184257 (+)
LOC118964840 NA coding upstream 377377 49847620 ~ 49848979 (+)
LOC110524421 NA coding upstream 392353 49823910 ~ 49834003 (+)
kitlg scf coding upstream 523398 49666532 ~ 49702958 (+)
LOC110524405 LOC106573116 coding upstream 786124 49435762 ~ 49440232 (+)
LOC110524453 LOC106573109 coding downstream 224491 50455556 ~ 50509791 (+)
LOC110524456 LOC106573106 coding downstream 299583 50530648 ~ 50592851 (+)
LOC110524482 LOC106573107 coding downstream 369570 50600635 ~ 50675495 (+)
LOC110524496 LOC106573105 coding downstream 561131 50792196 ~ 50800380 (+)
c1h11orf49 cssa16h11orf49 coding downstream 625515 50856580 ~ 50871347 (+)
G54732 NA non-coding upstream 32627 50193361 ~ 50193729 (+)
G54651 NA non-coding upstream 134790 50059362 ~ 50091566 (+)
G54645 NA non-coding upstream 161045 50049094 ~ 50065311 (+)
G54571 NA non-coding upstream 238750 49987392 ~ 49987606 (+)
G54800 NA non-coding downstream 54017 50285082 ~ 50285537 (+)
G54835 NA non-coding downstream 97493 50328558 ~ 50329351 (+)
G54841 NA non-coding downstream 105922 50336987 ~ 50337328 (+)
G54878 NA non-coding downstream 156033 50387098 ~ 50387332 (+)
G54879 NA non-coding downstream 156809 50387874 ~ 50388305 (+)
G53181 NA other upstream 1332444 48893497 ~ 48893912 (+)
G52324 NA other upstream 1843099 48380542 ~ 48383257 (+)
G52080 NA other upstream 2201398 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 2967458 47227246 ~ 47260224 (+)
LOC110524575 fgf3 other downstream 1218757 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 3435150 53632830 ~ 53705421 (+)
G59031 NA other downstream 3757075 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 3813784 54044813 ~ 54089850 (+)
G59963 NA other downstream 4490123 54721188 ~ 54721463 (+)

Expression


Co-expression Network