RNA id: XM_021604059.2


Basic Information

Item Value
RNA id XM_021604059.2
length 3245
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110524434
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50226356 ~ 50231065 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTATAGGCCGAGCCCGTCTCATGAACTATATGTTCCATCTCAACTTGTTGCTACACAGCTTGATAATGTACCTTTCCACCTGTGTTTCCCTGCAGATCCCAGTGAGAGTGTCTCCATCATGAGGCTGGTGTGGAAGTCCTTGGACAAGATGAGGTGTTTCCGTAAACGCTCCACCATCCCCTTCCTGGGGTTCCTGATCACCTGTCTACTCTTCCTCAATCTGTACATTGAGGATGGGTATGTGCTGGAGGAGGACAAAAGGCAACTGAGAGAAACGTCCATGCATCCTTCAAACTCTGAGAGATATGTTCACACCTTTAGAGAGCTCACAAATTTCTCTGGAACCATAAACGTCACATATCGTTACCTCGCCGGAACCCCTTTGCCTCGAAAGAAATATCTAACCATTGGACTGTCGTCCGTCAAAAGAAAAAGAGGGAATTACCTCATGGAGACGATCAAATCCATTTTCGACCAGTCCAGTTATGAGGAGCTGAAAGAGATTGTGGTGGTGGTTCACCTGGCGGACTTTGACCTGGCCTGGTGTGAAAACCTGGTGCAGGACATCTCCAGGAAGTTTGCCCACCACATCATCGCTGGACATCTCCTGGTGATCCATGCCCCTGAGGAGTACTACCCATCACTGGATGGGCTGAAAAGGAACTACGACGACCCAGAGGACAGGGTACGCTTCCGCTCCAAGCAGAATGTGGACTACGCCTTCCTCCTCAACTTCTGCACCAACCTCTCAGATTTTTACATGATGCTGGAGGACGATGTGCTCTGCTCAAGGAACTTCCTGACATCCCTGAAGAAGGTGGTCACCTCCAGGGAAGGCTCCTACTGGGTGATGCTGGAATTCTCCAAGCTTGGCTACATAGGGAAGCTCTACCACTCAAGAGACCTTCCGCGCCTGGCCCACTTCCTGCTCATGTTCTACCAGGAGATGCCTTGCGACTGGCTCCTTATTCACTTCCGGGGCCTGTTGGCCCAGAAAGATGTGATCCGCTTCAAGCCCTCTCTGTTCCAGCACATGGGTTACTACTCCTCATATAAGGGAGCAGAGAACAAGTTGAAGGATGATGATTTTGAAGAGGACTCTATTGATATCCCTGACAACCCTCCTGCCAGCCTGTACACAAACATTAATGTATTTGAAAACTATGACGCCACCAAGGCTTATAGCAGTGTGGACGAATACTTTTGGGGGAAACCCCCCTCTACCGGAGACTTCTTTGTCATAGTATTTAACAAATCAACTAAAATAAGCAAAATCAAAATCTTGACAGGAACGGACGATCGTCAGAATGATATCCTGCACCATGGAGCTCTGGAAGTAGGAGAGAAGCTGGTGGGGACAAAGAGAGGAAGGCAGTGTTCTTCCTACATCACGTTAGGGGAGTTTAAAAATGGCAACATTGACGTTCAAGACGTGGACCACAAGATTGCCTTTGCCATTGAGTGTGTTCGTATTGTGGTGACTGCCAGTCAGAAAGAATGGCTGATTATTAGGAGTATAAGCTTGTGGACTACACAACCCCCCAGTCAATGAGAACAACACAAAAACTATCATCATACCATGTAGGCAACAGTTGGTTTACTAATTCATTCGATAATGTATTCATTTATTTACGTATTAATGTATGTATTTATTGTTGCATGTGTTAATTTATTTAATGATTTATTTTacccattttatttatttaattttatagTACATGTATTTATATTTGTATCTACAAATCAATCTAGAGTTTTTATATTTGAAAGTATGCTTTAATGCTTTTTACAATTATGGAAAAATGTTTAATGATTGTCTGACTAACCACTTTTATGGACGTTGAACCGTTTTTATGGATGTGAGATCATGGGAAATATCTGTTGGCTATTGTACTCATGTTGTACatcttattattatttatatttctcaGTGTCTTTCCACATCAAAAGTAGCCTCTGGGTCCTCTGGACTTGAACAGTGGTGATTAAGAAATTACACGCCTGCAGACAATTATAGACTTAGGAACATAGCATTACTCCAAATGTTCTTGCTATCAACAAATAGCCACATTCACCCCTTTCCAAAGTTATCATCATCCTTTACATCTTACCCTACAAGCATTATGACGGTCATTATGTCTGCGAATATCCATTCCATCCCTCCTATTCAGGCTGGCGTGGTGTTAGAGAGTTGGAGCGAGCTCTGCAAATGTATTTCCCTGGCACTGTATGTTCCATCAGAGCCGCTGACAGGAGAACAATGTTTGTTTTCACCCATCTTCTCTAACATCTCAGATTGGAGCACACAGTAAGGAATGGGGTGGAACTGATAGTTGACATTTTTTTTGTCACCACAGCACACTTTTACCGGAGTAACGGTCTGTGTTAGGAGCGCTCTCTGCTCGCTACACCAGCAAACAACAACACCCCTGGAGCTAGGGTCTCAAGTAAATTCACTCTCTTTTCCCAATGATGTGCTCTCAGGCACTAAAGGATCTTCTCTTAGAATGTTTCTGTAATATAGAAACAAATCAACTTTATTTACTCTGTGTGGTAACCGTGGGCCATGGTATactaaaatcaaattgtatttgtcacacgcatcgtagacaacaggtgtagactaccaatgaaatacttacttactggtccatttccaacaatgcagagttaaagacaagattttttttaaataaaaatagtgacacgaggaataaatacacaatgaaataACAAATACGAATAAAGAGTAaacataacatggctatatacaggaagtagaacataacatggctatatacaggaagtagaagatatcatggctatatacagggagtaccagtaccgagacGATGTTCAGGGATaaaaggtaattgaggtagcttcagaatgtactgtactgtacatatacagtgccttcggaaagtattcagacaccttgactttttttcCACCTTtttttaggttacagccttattctaaaatggaatcaattgtttttttcctcaatctatacacagtaccccataatgacaaagcaaaaatatgtttgtagaaattttggcaaatgtataaaaagaaaacagtttgaaatactacatttacataagtaccctttactcagtactttagaTGCTTTTTGGGAAACTCGAAGCGGGCAGTCATGTGctttttaatgaggagtggcttccgtctggctactctaccataaaggcctgattggtagagtgctgaagtgatggc

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K13748 MGAT4C; alpha-1,3-mannosylglycoprotein beta-1,4-N-acetylglucosaminyltransferase C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60991 lncRNA upstream 32627 50193361 ~ 50193729 (+) True G54732
TU60887 lncRNA upstream 42099 50037574 ~ 50184257 (+) False LOC118964841
TU60907 lncRNA upstream 134790 50059362 ~ 50091566 (+) True G54651
TU60900 lncRNA upstream 161045 50049094 ~ 50065311 (+) True G54645
TU60824 lncRNA upstream 238750 49987392 ~ 49987606 (+) True G54571
TU61065 lncRNA downstream 54017 50285082 ~ 50285537 (+) True G54800
TU61100 lncRNA downstream 97493 50328558 ~ 50329351 (+) True G54835
TU61106 lncRNA downstream 105922 50336987 ~ 50337328 (+) True G54841
TU61147 lncRNA downstream 156033 50387098 ~ 50387332 (+) True G54878
TU61148 lncRNA downstream 156809 50387874 ~ 50388305 (+) True G54879
XR_005052021.1 mRNA upstream 142816 50037523 ~ 50083540 (+) False LOC118964841
XR_005052020.1 mRNA upstream 377377 49847620 ~ 49848979 (+) True LOC118964840
XR_005052016.1 mRNA upstream 392353 49823916 ~ 49834003 (+) False LOC110524421
XM_021604100.2 mRNA downstream 224491 50455556 ~ 50509791 (+) False LOC110524453
XM_021604143.2 mRNA downstream 299583 50530648 ~ 50592851 (+) False LOC110524456
XM_036979468.1 mRNA downstream 299583 50530648 ~ 50592851 (+) False LOC110524456
XM_021604114.2 mRNA downstream 299584 50530649 ~ 50592851 (+) False LOC110524456
XM_036979447.1 mRNA downstream 299584 50530649 ~ 50592851 (+) False LOC110524456
TU60888 other upstream 142360 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 1332444 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 1843099 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 2201398 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 2967458 47227246 ~ 47258898 (+) True LOC110520864
TU62774 other downstream 1218757 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 3435150 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 3757075 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 3813784 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 4490123 54721188 ~ 54721463 (+) True G59963

Expression Profile