RNA id: TU61147


Basic Information

Item Value
RNA id TU61147
length 235
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G54878
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50387098 ~ 50387332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccaaagatgttctattgggttcaggtctggagactggctaggccactccagtaccttgagatgcttcttacggatcCACTCCTTAggtgccctggctgtgtgtttcgggtcgttgtcatgctggaagacccagccacgacccatcttcaatgctcttactgggggaaggaggttgttggccaagatctcgcaatacatcgccccatccatcctcccctcaatacggtgcagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61106 lncRNA upstream 49770 50336987 ~ 50337328 (+) True G54841
TU61100 lncRNA upstream 57747 50328558 ~ 50329351 (+) True G54835
TU61065 lncRNA upstream 101561 50285082 ~ 50285537 (+) True G54800
TU60991 lncRNA upstream 193369 50193361 ~ 50193729 (+) True G54732
TU60907 lncRNA upstream 295532 50059362 ~ 50091566 (+) True G54651
TU61148 lncRNA downstream 542 50387874 ~ 50388305 (+) True G54879
TU61158 lncRNA downstream 11936 50399268 ~ 50399486 (+) True G54889
TU61169 lncRNA downstream 36288 50423620 ~ 50423916 (+) True G54900
TU61170 lncRNA downstream 36599 50423931 ~ 50424255 (+) True G54901
TU61171 lncRNA downstream 37142 50424474 ~ 50425039 (+) True G54902
XM_021604059.2 mRNA upstream 156033 50226356 ~ 50231065 (+) True LOC110524434
XR_005052021.1 mRNA upstream 303558 50037523 ~ 50083540 (+) False LOC118964841
XR_005052020.1 mRNA upstream 538119 49847620 ~ 49848979 (+) True LOC118964840
XR_005052014.1 mRNA upstream 553095 49823918 ~ 49834003 (+) False LOC110524421
XM_021604100.2 mRNA downstream 68224 50455556 ~ 50509791 (+) False LOC110524453
XM_021604143.2 mRNA downstream 143316 50530648 ~ 50592851 (+) False LOC110524456
XM_036979468.1 mRNA downstream 143316 50530648 ~ 50592851 (+) False LOC110524456
XM_021604114.2 mRNA downstream 143317 50530649 ~ 50592851 (+) False LOC110524456
XM_036979447.1 mRNA downstream 143317 50530649 ~ 50592851 (+) False LOC110524456
TU60888 other upstream 303102 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 1493186 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 2003841 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 2362140 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 3128200 47227246 ~ 47258898 (+) True LOC110520864
TU62774 other downstream 1062490 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 3278883 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 3600808 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 3657517 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 4333856 54721188 ~ 54721463 (+) True G59963

Expression Profile