RNA id: TU59387


Basic Information

Item Value
RNA id TU59387
length 416
RNA type TUCP
GC content 0.38
exon number 1
gene id G53181
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48893497 ~ 48893912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacctttgtttgcaattacatagatcatatgttttctgtagttcttgaccaggtttgcacacactgcagcagggattttggcccactcctccatacagaccttctccagatccttcaggtttcggggctgtcgctgggcaatacggactttcagctccctccaaagattttctattgggttcaggtttggagactggctaggccactccaggaccttgagatgcttcttacggagccactccttagttgccctggctgtgtgtttcgggtcattgtcatgctggaagacccagccacgacccatcttcaatgctcttactgagggaaagaggttgtaggccaagatctcgcgatacatggccccatccatcctcccctcaatacggtgcagtcgtcctgtcccctttgcagaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58684 lncRNA upstream 73505 48817748 ~ 48819992 (+) False G52546
TU58686 lncRNA upstream 73505 48817748 ~ 48819992 (+) True G52546
TU58580 lncRNA upstream 266700 48626598 ~ 48626797 (+) True G52450
TU58520 lncRNA upstream 294646 48598196 ~ 48598851 (+) True G52390
TU58561 lncRNA upstream 319238 48573919 ~ 48574259 (+) True G52431
TU59463 lncRNA downstream 171782 49065694 ~ 49079733 (+) True G53252
TU59521 lncRNA downstream 196208 49090120 ~ 49090352 (+) True G53308
TU59531 lncRNA downstream 213593 49107505 ~ 49107861 (+) True G53318
TU59562 lncRNA downstream 276429 49170341 ~ 49170549 (+) True G53349
TU59565 lncRNA downstream 280474 49174386 ~ 49174596 (+) True G53352
XM_021603917.2 mRNA upstream 78484 48804907 ~ 48815013 (+) False LOC110524349
XM_021603926.2 mRNA upstream 78484 48804908 ~ 48815013 (+) True LOC110524349
LOC110532376 mRNA upstream 94993 48759039 ~ 48798504 (+) True LOC110532376
XM_036979261.1 mRNA upstream 186928 48635499 ~ 48706569 (+) True cttnbp2
XR_005051992.1 mRNA upstream 188401 48635495 ~ 48705096 (+) False cttnbp2
XM_021604008.2 mRNA downstream 541850 49435762 ~ 49440232 (+) True LOC110524405
XM_021578809.2 mRNA downstream 772620 49666532 ~ 49702958 (+) False kitlg
NM_001281361.1 mRNA downstream 772632 49666544 ~ 49700375 (+) True kitlg
XR_005052015.1 mRNA downstream 929998 49823910 ~ 49834003 (+) False LOC110524421
XR_005052016.1 mRNA downstream 930004 49823916 ~ 49834003 (+) False LOC110524421
TU58443 other upstream 510240 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 868539 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 1634599 47227246 ~ 47258898 (+) True LOC110520864
TU56623 other upstream 2032033 46857908 ~ 46861464 (+) True LOC110524042
TU55851 other upstream 2900606 45992273 ~ 45992891 (+) False G50010
TU60888 other downstream 1143662 50037574 ~ 50083996 (+) True LOC118964841
TU62774 other downstream 2555910 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 4772303 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 5094228 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 5150937 54044849 ~ 54062254 (+) False LOC110525327

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007404 False 5932 mRNA 0.42 15 NC_007122.7 3991911 ~ 4024087 (-)