G53252


Basic Information

Item Value
gene id G53252
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49065694 ~ 49079733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU59463
GCAAGCATCACTAGCAGATGGGATTATATTACATTTTAATGTGCACAGTGACGTGAGATTGTACAGTAAAAGCAAGGGAAGGAAAATGTCATTTTAATATAAAAATACATATGACCTTTTTCATTCAATTAAGCAACGTGCTAATATTTACCATCCTCACAGAGAGCAGGTATTCCTtatataatgcactatatagggggcATTTGGGACGCTAACAAAGTGTGCTTCATGTCAGTATATTAAAAAACATGCCCCCATTCGCTATCAAACAGCAGTGATTTCAGGGGTGGaagacctacagtgcattcggaaagtattcagaccacttgactttttccacattttgttattgttACAGCGTTATTATAAGAtttattaaatcgtttttccccctcaaaaacagttttttttaaaaatgtttgctaatttataaaaaaaaaaatgaattatcACGTtcacacaagtattcagacactttactcagatctttgttgaagcacctttggcagtgattacagtgtCGAGTTTCCTTGGGTATGTTGCTACAAGCTCTgtaaacctgtatttggggagatcctcccattcttctctgcagatcctcaagatctgtcaggttggatggggagcgtcgctgcacagctattttcaagtctctccagagatgttcgtttGGGTACTAGAagcggctctggctgggccactcaaggacattcagagacttgtcccaaagacacttctgcattgtcttgaatgtgtgcttagggtcgttgtccagttggaaggggaaccttcgccccagtctgaggtcctgagcgctctggatcaggatttcatcaaggatctctctgtactttgctccgttcatctttccatcaatcctgactagtctcccagtccccgttgctgaaaaacatccccatagcatgatgctaccaccaccatgcttcacagtagggatggcgccaggttttctccagaaatgacgcttggcattcaggctaaagagttcaatcttgctttcatcagaccagagaatcttgtttctcatggtctgagagtatttaggtgccttttggcaaactcctagaGGCGGTCatgggccttttactgaggagtgacttctgtctggccactctaccataaaggcctgataggtggagtgctgcagagttgtccttctggaaggttctcccatctccacagtggaactctggagctctgtcagagtgacgattgggttcttgctcacctcgcttaccaagacccttctccccgattgctcagtttggctgggcggccagctctaggaagagtcttggtggttccaaacttcttccatttaagaatgatggaggtcactgtgttcttggtgaccttcaatactgtagaaatgttttggtacccttccccagatctgtgcctcgacacaatccggtgtcggagctctaaggacaattccttcaacctcatggcttggttttgctctgacatgcactgtcaactgtgggacctttatatagacaggtgtgtgcctttccaaatcatgtccaatcaattgaatttaccacagatagactccaatttgtagaaacatctcaaggatgatcaatggaaacaggatgcacctgatctcaattttgagtctcatagcaaagggtctgaatacttatataaataaggtatttcagttttttatttttaatacatttgcaaaaatgtcaaacaacctgttttcgctttgtccttatggggcattgtgtgtagattgatgaggacagtCTGATGATTGATGAggttttttaaataatttaatcaattttagaataatgctgtaatgtaacaaaatgtggaaaaagtgaagaggtctgaatactttctgagggcaCTGTAGTCCTTGGTTGAAGCTGTCGAGAGcacaggtggctggtggcactaattagggaggacgggctcatagtaatggctggaacggattaaatggtatcgaacacatccagccattatgagctgtcctcgcctcagcagcctcctgcgGACGACAGTCAATAAGCAGAAGTCTACACCAGACCATACTATTCAATCAGGGAATAAACTCAAAACTCACAGTGGagtaaaccatttttttttttaaagacaacgCAACTCAAAAGTTGCATACATTGGGCAAACAAAGCTCAAAACAAAAAGTTCTTCATAGAGTGTAGATAAAGCATGGTTATTTAGCTACGGCTACAGCAAATGCGCATCAACATTGAAAGTTCAACCCTCCCTATACAGAGAAGAGACCTCACGTGGTTTAAAAGAAGATCCCACAGGTGTGAATGTAATGAAACAAACTTCAAGTGATATTTTTTTGAGATTCAAAGGCAAACATGAAAAAACATCCTCGGTCACATAGAAAAATGGTATATACCATGAAGGCTGTTCCGTTCGTAGACTTGGTTGTTGTCATACAATTTCATCACTCTTTCTTGGATTGGAGCTGGAACAAAACAGTGTTGATGGAGAGAGTGATTATGATGTCATCAGGTGGTTGTCTTATACccgtgtgtctgcctgcctctatgtctgtctgtcaggacaTGCAGACTGACAGTGGCGTGTTGGTTGGCTCGGTGGCTTTGCAGAGGTGGTGATGCATGCAGAAACAAGGGCAGGTTCAGTGTTTCAGACTCGGAGTCATGGCAGGCATAGCGGGGTGGAGGGTGTGTGAGGGggtcaggtgggggggggggggtagtgggaCTGAGAGAGGGGTGTTGAGAGGGTTTTGGCTCTATGATTTTGTGCTATGTCAGGTGGGATTTGTCAACTCTCTCCAAACAACGCAATGGGACACGCACAGGGATATCCCTTCCCCCGCACCCAAAGCATTACCCTCCCAAAAATAGGAACACAAACCCAGCAAAGAGGACACCAAAATCCATCATATGAGCCTATCAATCAATTAACTaactaatcaatcaatcaataattcaACCAATCATACCCTTCATTCAACAAGCTGTAATCAGAGAGAGGATCACACAACATTTCGGAATAATGTTAGGAATAAtggagggggggtggggtggcTAGCGTGGTGGTGCTCCTGCAATGATAAACAACACTAAcaaaaaactaaataaaaaatataaacaaagaCCCCAAGAAATGACTTGACATAATCATGTGCCCCTGTTAGTTAAACCAGCACTGGAGAGAGAAACAATAGTCGTTGagggagacggagaaagagaggcgGGGCAAGGTACTCTGTGTCTCCGCCCCCTCACCGCCAACATCCCGCCCACAGCTCTAGAAATGTCTCACCCTCTTCTTTTATCAAAAAAGGTtgctccctctcttttctttcagtTTCTTCAGGTGTCTTCTCTCCCTTTAAAATCTGATGGTTTCTAGCCCTCACCTCATTCCCACCATCCTCCATTCATTTTCCTCTTCTTCTACACCCCCTTGGTGGTGCTGATGCGGACGCTGCTGAAGCACTTGCCCATGGCTTCAAACAGAGGATCGCAGAAGGTGTGGATGCAGATGGAGTAAACACGGCTGACACAGTGGATCTCGATCAGATAGCTCTTGATGCACGGCACCACCGCCCAGATGTGGATGAAGGACAGGATGGCGAAGAAGATGCCCCAGACCAGCGCCAGCGGGATTCCCACCAGGGCGGTAAGGAGACGATAGCACCAGTACTTGGTCACCGTGAAGGTGGTGAAGCTGGCCTTCCACACGCCATCGAAGCTGTATGTCCCTGGAGGCTCCGCGATCACATCCTCGAACTCCACCTTGACAACGTCGTCGTTTAAGTATTTGGGGTCCCGGTTCACCAGGTCGATCTCTTTCGTGTGGACGTCCTGCATCGTCTTCATCCCACTCATACTGTCGTTATCCATCTCTTTGTTATTTGGTTTGTATATGTTCCCTTGTTTCCTGATGAACTGCGAGTGCAGAAATGACTTGTAGTCCGGAGGGAAAGAAGAGAAGCGGAGGATAAATTAGTGGAGAGACGGGTAGAGAGCAGAGGATAGACGGACTGAGCGCACCAGA

Function

NR:

description
caveolin-1 isoform X1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU59463 True 4050 lncRNA 0.45 2 49065694 49079733

Neighbor

gene id symbol gene type direction distance location
LOC110524349 LOC106573123 coding upstream 250681 48804907 ~ 48815013 (+)
LOC110532376 NA coding upstream 267190 48759039 ~ 48798504 (+)
cttnbp2 cttnbp2 coding upstream 359125 48635495 ~ 48706569 (+)
LOC110524313 LOC106573128 coding upstream 469086 48591020 ~ 48596608 (+)
LOC110524302 LOC106573126 coding upstream 474780 48552081 ~ 48590914 (+)
LOC110524405 LOC106573116 coding downstream 356029 49435762 ~ 49440232 (+)
kitlg scf coding downstream 586799 49666532 ~ 49702958 (+)
LOC110524421 NA coding downstream 744177 49823910 ~ 49834003 (+)
LOC118964840 NA coding downstream 767887 49847620 ~ 49848979 (+)
LOC118964841 NA coding downstream 957790 50037523 ~ 50184257 (+)
G52546 st7 non-coding upstream 245702 48817748 ~ 48819992 (+)
G52450 NA non-coding upstream 438897 48626598 ~ 48626797 (+)
G52390 NA non-coding upstream 466843 48598196 ~ 48598851 (+)
G52431 NA non-coding upstream 491435 48573919 ~ 48574259 (+)
G52395 NA non-coding upstream 524806 48530447 ~ 48540888 (+)
G53308 NA non-coding downstream 10387 49090120 ~ 49090352 (+)
G53318 NA non-coding downstream 27772 49107505 ~ 49107861 (+)
G53349 NA non-coding downstream 90608 49170341 ~ 49170549 (+)
G53352 NA non-coding downstream 94653 49174386 ~ 49174596 (+)
G53375 NA non-coding downstream 123562 49203295 ~ 49264079 (+)
G53181 NA other upstream 171782 48893497 ~ 48893912 (+)
G52324 NA other upstream 682437 48380542 ~ 48383257 (+)
G52080 NA other upstream 1040736 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 1806796 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 2204230 46854230 ~ 46861465 (+)
LOC110524575 fgf3 other downstream 2370089 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 4586482 53632830 ~ 53705421 (+)
G59031 NA other downstream 4908407 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 4965116 54044813 ~ 54089850 (+)

Expression


Co-expression Network