G52395


Basic Information

Item Value
gene id G52395
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48530447 ~ 48540888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU58525
CCCTGGCTAAGCATGGGAGTGCACCAacaccctccaccctctccctccatttatcTGGCCCTGTGGGACCGGGTCTgccacagtctctctctgacctctcagCTCCCAGATGGAACACAATGGGTCAACGGGGAGAAGACCTGGAGAGACCAGCATATACCTCACCCTAGCCACTGTATCAAGACACACTTCAAAAATATGTTGCACTGATTAAGTGGATAGAGGATCTTACAGACGCATCACCATCagttctcagttgtcttgaaagctcCATAAATCCGGAGAATGACAGATTTGATGACAACATTTTCCCACAAAGGactgccgcgccaccttcctgttcaagtcagcacagcacaacaaggctgctgattgtcccacacacctgtcaccatcgtcttgcgcacctgcgcctcatgacactcacctggactccatcatctccttgattatcttccctatatctgtcactctcttggttctttcctcaggtgttattgactctgttttcacgtctgtgcgttgtttgtgttacgtgtttattgtttaatttattta

Function

NR:

description
uncharacterized protein LOC109867584 isoform X3

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU58525 True 558 lncRNA 0.41 4 48530447 48540888

Neighbor

gene id symbol gene type direction distance location
LOC110524291 LOC106573129 coding upstream 20803 48483885 ~ 48510535 (+)
LOC110524253 LOC106573262 coding upstream 240886 48256867 ~ 48289561 (+)
LOC118964788 NA coding upstream 366706 48147399 ~ 48163741 (+)
LOC110524199 LOC106573256 coding upstream 517101 47983046 ~ 48013346 (+)
rpgrip1l rpgrip1l coding upstream 552142 47949465 ~ 47978305 (+)
LOC110524302 LOC106573126 coding downstream 11193 48552081 ~ 48590914 (+)
LOC110524313 LOC106573128 coding downstream 50132 48591020 ~ 48596608 (+)
cttnbp2 cttnbp2 coding downstream 94607 48635495 ~ 48706569 (+)
LOC110532376 NA coding downstream 218151 48759039 ~ 48798504 (+)
LOC110524349 LOC106573123 coding downstream 264019 48804907 ~ 48815013 (+)
G52300 NA non-coding upstream 175933 48354149 ~ 48354514 (+)
G52292 NA non-coding upstream 187097 48343098 ~ 48343350 (+)
G52289 NA non-coding upstream 189605 48340260 ~ 48340842 (+)
G52284 NA non-coding upstream 196900 48333269 ~ 48333547 (+)
G52431 NA non-coding downstream 33031 48573919 ~ 48574259 (+)
G52390 NA non-coding downstream 57308 48598196 ~ 48598851 (+)
G52450 NA non-coding downstream 85710 48626598 ~ 48626797 (+)
G52546 st7 non-coding downstream 276860 48817748 ~ 48819992 (+)
G53252 NA non-coding downstream 524806 49065694 ~ 49079733 (+)
G52324 NA other upstream 147190 48380542 ~ 48383257 (+)
G52080 NA other upstream 505489 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 1271549 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 1668983 46854230 ~ 46861465 (+)
G50010 LOC106573227 other upstream 2537556 45992273 ~ 45992891 (+)
G53181 NA other downstream 352609 48893497 ~ 48893912 (+)
LOC118964841 NA other downstream 1496686 50037523 ~ 50184257 (+)
LOC110524575 fgf3 other downstream 2908934 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 5125327 53632830 ~ 53705421 (+)
G59031 NA other downstream 5447252 53988140 ~ 53988597 (+)

Expression


Co-expression Network