LOC110532376


Basic Information

Item Value
gene id LOC110532376
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48759039 ~ 48798504 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110532376
atgccCGGAACACCCTTCCCTGTTCGGCCACAGGACTCTCCATTTGAGTGTTCTTTGGGGTATCAACCTCCACTCTTCCCGGAACAAGAGGAAGAGGTCAGAgtaccctcggcccagatgtttgtccgccgctGTCAATGTACCTGGAGAAGAGCTCGGGCGGTACTTCTCAAAACCAACTCTAGGTACCGTCGACAAGAGGACCGTCGCCGGACTCCAGCTCCCCGCTACCGcattgggcagagggcccatccctccccCCAGGTAATCGATGGCCAGCCAGCGTATATGCACCTTTCTAATTCCTGTGTCAGGCCTGGATGTCGAGGCCTGGATGTCAAGGCCAAGCTGGGCTTTGAGTGGACACCGCTGATGTGTGCCGTGCACGTGGCTCACTATGACATCGCCAAGTTGCTGCTGGACATAGGAGCCAGCTCTAACTTCGGCAGAGACTAAACCAACGCCATAGACCAGTACACGGTACTGATGGCTGCATGCATGGCTTCTGCCAGAGAGGACAAGATGGTCAAGTGTGTGGAGCTGCTCTTGTCCAGAAACGCTGACCctaTTCCCATTCCCAGGTCTCGTATGACCTCCCTGATACTGGTGTCCCGAGATGGCTACAATCAGGTAATCAACTTGCTGGTGTCTCACGGGGCAGAGGTCAACTCCCAGGATGAAAATGGGTACACAGTCTCGACTGTGGCAGTGCAGTATGGCAGAGAGGAGCCGGTCCTCAAGCTTCTCTAGCTGGGGTCAGACAAGACCAAAGCAGGAAAGATTGCTGCTGACACAGCCAAAGTCTTCAAACGACCACAGATTGCCAGGATCCTGGCGTCCCCAGAGTATCATTTGTTTTCTGGGAATGAAAATGACATCACTTGGAGCTACTTGTTGACCAGGGAGAAGGATGATCTTCCTCAGATTGGTATCTTCAACCCAGAGGACCAGCAGAAGGTTCTGAGTGTGGTGAAGGAGATTCATCTGGACCGGGTCGACCTGGACACACTCAGCCAGTTTGAGAACATAAACAGCGGGAGTGAGGCGCTGTAGAACGTCCTGATTAGCCTGCGGCAGCAGCGCTGCTGCCTGACCGAGACCGTGCAGGACGTCATCagctgattccctctctccaatccCCAGCTGGTGTTGTCCCTGGATCCTAAGGAGGAAGCCCAGGCCATCTGTAATGAGCTGGTGGCCCGGACTGGAGACCTGCAGAAAGAAGTCACCTGTCTAAGGAACCTGCTTCACAAGGGAGGGTCCTGTGTGTAA

Function

NR:

description
ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110532376 True 1275 mRNA 0.55 12 48759039 48798504

Neighbor

gene id symbol gene type direction distance location
cttnbp2 cttnbp2 coding upstream 52470 48635495 ~ 48706569 (+)
LOC110524313 LOC106573128 coding upstream 162431 48591020 ~ 48596608 (+)
LOC110524302 LOC106573126 coding upstream 168125 48552081 ~ 48590914 (+)
LOC110524291 LOC106573129 coding upstream 249395 48483885 ~ 48510535 (+)
LOC110524253 LOC106573262 coding upstream 469478 48256867 ~ 48289561 (+)
LOC110524349 LOC106573123 coding downstream 6403 48804907 ~ 48815013 (+)
LOC110524405 LOC106573116 coding downstream 637258 49435762 ~ 49440232 (+)
kitlg scf coding downstream 868028 49666532 ~ 49702958 (+)
LOC110524421 NA coding downstream 1025406 49823910 ~ 49834003 (+)
LOC118964840 NA coding downstream 1049116 49847620 ~ 49848979 (+)
G52450 NA non-coding upstream 132242 48626598 ~ 48626797 (+)
G52390 NA non-coding upstream 160188 48598196 ~ 48598851 (+)
G52431 NA non-coding upstream 184780 48573919 ~ 48574259 (+)
G52395 NA non-coding upstream 218151 48530447 ~ 48540888 (+)
G52546 st7 non-coding downstream 19244 48817748 ~ 48819992 (+)
G53252 NA non-coding downstream 267190 49065694 ~ 49079733 (+)
G53308 NA non-coding downstream 291616 49090120 ~ 49090352 (+)
G53318 NA non-coding downstream 309001 49107505 ~ 49107861 (+)
G53349 NA non-coding downstream 371837 49170341 ~ 49170549 (+)
G52324 NA other upstream 375782 48380542 ~ 48383257 (+)
G52080 NA other upstream 734081 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 1500141 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 1897575 46854230 ~ 46861465 (+)
G50010 LOC106573227 other upstream 2766148 45992273 ~ 45992891 (+)
G53181 NA other downstream 94993 48893497 ~ 48893912 (+)
LOC118964841 NA other downstream 1239070 50037523 ~ 50184257 (+)
LOC110524575 fgf3 other downstream 2651318 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 4867711 53632830 ~ 53705421 (+)
G59031 NA other downstream 5189636 53988140 ~ 53988597 (+)

Expression


Co-expression Network