LOC110524349 (LOC106573123)


Basic Information

Item Value
gene id LOC110524349
gene name LOC106573123
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48804907 ~ 48815013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603917.2
TTGTTCGTTTCTTCCACGAAGATCATGAGAGAATCCAAGTTCAGCCTTAACCTCATCCCAACAGGAGACCGAGCACCAGACCTCCCAATTACAAAGAAGAGACGGGATTGGGAACATTAAATCGCTTGCATGAAGCGGAGATCAAAGATAAAGGAAATACAATGTGACAATCGTGCAGATCGAGAAACGAGTTCAAAAGAATTTGATAATCTAATTGTAAATGCACCCAAACTTTTGGGCGGCCTTTGATTAATCTGCATTTAGCTTCTGCAAATAATATTAGTCATCATGGCCGCATCTCGTCTAATTCTTAACCTGTGTGCATAATATGGCGTCATGGCTGTGCGTTTCTGGAATTTTTGGCGACTGTGCGTTATAGGCATAAGCATAACTAAGCACGTTTGCAGCGCACCAGTTCCTTCTAAACACGTCAATTTGATTGTTTTTGTTAAAACGCTCAGGGTTTAACACATTACCTCGTACCACATTCTACACCTTACCGCTTGGAAATCGGCCAAACTTGTGTCTGGTATCAAGCTAGCCTGAACAGATACTTTCAGACATCTAATTTCTTCACCTCATTCCTGAGACAGGACTGCGCCCACCCCTTGTGTAAGCAATTTAAACCTGATAGCAAACGATCATCTGCCTATCTTTACACTGCAAATATCTGTTAAGTTTAGATCGACTCAATATCTCATGCGCTTCCAATATCTAATGAGCTTCTTTTACCATTCTCTTTGTCATATAAGCGTTATGGTTTATATGTACAAAGATCCATCCGGGCGGTAAACCTCTTCTGAtcgatttatttttttaatgcaaGACAAAGTAGAACTTTGATTTGTGCAATCGAGAAGCTGTCAGGACTCCTGTCTGACGCGCGCCTGTGTTGTTTTCTACTCATGGAAATGCTCAGTACAAGTGCCTGAATGTGCACACCGACAAAACTTTAGTAATATGAATTTATTGCCAAGTGGAAAATGCTTTTATTTATCTGTAGTAATCTGCTGGCTAGGGTCAAGGGTCGGCGGATCTTTATGGTACATGGGAACCCTTGGGTCGCAAGTGATGTGCGACAACATCCCAGGGTTAGTCAACAAACAGCGGCAGCTGTGCCGCCAGCATCCCAACATTATGCAGGCGATCGGAGCCGGGATTAAAGACTGGATCGGGGAGTGCCAACATCAGTTTCAGAACCACCGCTGGAACTGCAATACCATAGAGCGAGACCACAATGTGTTCGGACGCCTACTGCTGCGTAGCAGTCGTGAAGCAGCCTTTGTGTACGCCATCTCCTCGGCCGGGGTGGTCCACACCCTGACCCGAGCCTGCAGCCAGGGAGAGCTGCAGTCGTGCTCCTGCGACCCCACCAAGAAGGGCTCGTCCCGGGACGCCAAGGGGGCGTTCGACTGGGGCGGCTGCAGCGACCACGTGGAGCACGCTATGAGGTTCAGCCAGGCCTTTGTAGATGCCAAAGAGCGGAAGGAGCGAGATGCCAGGGCTCTGATGAACCTTCACAACAACCGCGCCGGGAGGAAGgCAGTGAAGCGATTAATGTCTCTGGAGTGTAAGTGTCACGGCGTGAGCGGCTCCTGCAGTGTCCGGACCTGCTGGCTGGCCCTGGCCGACTTCCGCCGCACGGGCGACCATCTGCGGCGGCGCTACAACGGGGCAGTGCAGGTGGTTATGAACCAGTATGGCACGGGCTTCACCACCGCACAGCGGCATCTCAAACGGCCCAGCAAAAACGACCTGGTCTACTTCGAGGACTCGCCAGACTACTGCATACGAGACCAAGAGTCCGGTTCGGTGGGGACGGGCGGGCGGGTATGCAACCGGACATCTCGCGGCGTGGACAGCTGCGAGGTGATGTGCTGTGGCCGGGGCTACGACACATCGCACATCAGCCACAACACCAAGTGTGAGTGCAAGTTCCACTGGTGCTGCGCTGTACACTGCCGGGACTGCAAGCTAGATGTGGATGTGCACACCTGCAAGGCCCAGACGTGACCATTGCGAACCACCAACCAACCGCTTGCACAACGTCTGTctgaaatggcagcctattccctatttagtgcactacttttgaccatgggccCCTATACCACATGTCGGCTACTCCGCCACAAATGCCTTTTTACAGTCCAAAGATACCCAATCTAATTTCCTTCTTCCCTTACATTCCATTATATTTATTTACTATTCCCCCCCCAGTACAAAATAACCTTTATGTAAATACAAACTTTATGTAATTTAAAAGAAAGTTCAGTATAGATGGGTTAGCAGACCACGTCACAAACTGTGTGCACGCACTTCCATGTGGCAGAAGTCAGCGTGGTGTGATTCTGCATGGCCAGATTGCTAGCaagaatgacaagaaactgccatgtggggaattgtAAGTGGCTCGTTTCATGTTAGTTATTCTTGATACCaggtcttgttttgaggtgttttggctgatgtcaatgctaatatggctaaaattagctagctaaccaacaactggaatgatgtatttgagagacaagtgctcattgtgtaAATGTATTTCTTTACAATAAACATTGGGGACGTTGTCAACTATCTAAGCCAATCCCCGTCTGTCTTGCCGCTAAACAACCCAATGTCTATATAGTTTATGGAATCTGTTTGAAATTGATAGCAGACCTGACCACACCCCCCTTTCCTCAACCAGCCAGTTACAAAACACGGTTTAGTCACCTAACCTGCAGCTATGATCCAATATTTATTAAAATGTTGATATGCTTCACAATCAAAATGGCAGGTTAGACATTGCTATACACaaaaagtattttattttatGTCTTTTTCCACTTTTTTAATGATGACAATTGATCACCTTTTTTTGTACAACAAAAAAACGGTTTTACATGAGATTTGAAGACAAAATGAAAACATATCAAATAAAGTCAAAAGCAATT
>XM_021603926.2
TGTTCGTTTCTTCCACGAAGATCATGAGAGAATCCAAGTTCAGCCTTAACCTCATCCCAACAGGAGACCGAGCACCAGACCTCCCAATTACAAAGAAGAGACGGGATTGGGAACATTAAATCGCTTGCATGAAGCGGAGATCAAAGATAAAGGAAATACAATGTGACAATCGTGCAGATCGAGAAACGAGTTCAAAAGAATTTGATAATCTAATTGTAAATGCACCCAAACTTTTGGGCGGCCTTTGATTAATCTGCATTTAGCTTCTGCAAATAATATTAGTCATCATGGCCGCATCTCGTCTAATTCTTAACCTGTGTGCATAATATGGCGTCATGGCTGTGCGTTTCTGGAATTTTTGGCGACTGTGCGTTATAGGCATAAGCATAACTAAGCACGTTTGCAGCGCACCAGTTCCTTCTAAACACGTCAATTTGATTGTTTTTGTTAAAACGCTCAGGGTTTAACACATTACCTCGTACCACATTCTACACCTTACCGCTTGGAAATCGGCCAAACTTGTGTCTGGTATCAAGCTAGCCTGAACAGATACTTTCAGACATCTAATTTCTTCACCTCATTCCTGAGACAGGACTGCGCCCACCCCTTGTGTACATGGGAACCCTTGGGTCGCAAGTGATGTGCGACAACATCCCAGGGTTAGTCAACAAACAGCGGCAGCTGTGCCGCCAGCATCCCAACATTATGCAGGCGATCGGAGCCGGGATTAAAGACTGGATCGGGGAGTGCCAACATCAGTTTCAGAACCACCGCTGGAACTGCAATACCATAGAGCGAGACCACAATGTGTTCGGACGCCTACTGCTGCGTAGCAGTCGTGAAGCAGCCTTTGTGTACGCCATCTCCTCGGCCGGGGTGGTCCACACCCTGACCCGAGCCTGCAGCCAGGGAGAGCTGCAGTCGTGCTCCTGCGACCCCACCAAGAAGGGCTCGTCCCGGGACGCCAAGGGGGCGTTCGACTGGGGCGGCTGCAGCGACCACGTGGAGCACGCTATGAGGTTCAGCCAGGCCTTTGTAGATGCCAAAGAGCGGAAGGAGCGAGATGCCAGGGCTCTGATGAACCTTCACAACAACCGCGCCGGGAGGAAGgCAGTGAAGCGATTAATGTCTCTGGAGTGTAAGTGTCACGGCGTGAGCGGCTCCTGCAGTGTCCGGACCTGCTGGCTGGCCCTGGCCGACTTCCGCCGCACGGGCGACCATCTGCGGCGGCGCTACAACGGGGCAGTGCAGGTGGTTATGAACCAGTATGGCACGGGCTTCACCACCGCACAGCGGCATCTCAAACGGCCCAGCAAAAACGACCTGGTCTACTTCGAGGACTCGCCAGACTACTGCATACGAGACCAAGAGTCCGGTTCGGTGGGGACGGGCGGGCGGGTATGCAACCGGACATCTCGCGGCGTGGACAGCTGCGAGGTGATGTGCTGTGGCCGGGGCTACGACACATCGCACATCAGCCACAACACCAAGTGTGAGTGCAAGTTCCACTGGTGCTGCGCTGTACACTGCCGGGACTGCAAGCTAGATGTGGATGTGCACACCTGCAAGGCCCAGACGTGACCATTGCGAACCACCAACCAACCGCTTGCACAACGTCTGTctgaaatggcagcctattccctatttagtgcactacttttgaccatgggccCCTATACCACATGTCGGCTACTCCGCCACAAATGCCTTTTTACAGTCCAAAGATACCCAATCTAATTTCCTTCTTCCCTTACATTCCATTATATTTATTTACTATTCCCCCCCCAGTACAAAATAACCTTTATGTAAATACAAACTTTATGTAATTTAAAAGAAAGTTCAGTATAGATGGGTTAGCAGACCACGTCACAAACTGTGTGCACGCACTTCCATGTGGCAGAAGTCAGCGTGGTGTGATTCTGCATGGCCAGATTGCTAGCaagaatgacaagaaactgccatgtggggaattgtAAGTGGCTCGTTTCATGTTAGTTATTCTTGATACCaggtcttgttttgaggtgttttggctgatgtcaatgctaatatggctaaaattagctagctaaccaacaactggaatgatgtatttgagagacaagtgctcattgtgtaAATGTATTTCTTTACAATAAACATTGGGGACGTTGTCAACTATCTAAGCCAATCCCCGTCTGTCTTGCCGCTAAACAACCCAATGTCTATATAGTTTATGGAATCTGTTTGAAATTGATAGCAGACCTGACCACACCCCCCTTTCCTCAACCAGCCAGTTACAAAACACGGTTTAGTCACCTAACCTGCAGCTATGATCCAATATTTATTAAAATGTTGATATGCTTCACAATCAAAATGGCAGGTTAGACATTGCTATACACaaaaagtattttattttatGTCTTTTTCCACTTTTTTAATGATGACAATTGATCACCTTTTTTTGTACAACAAAAAAACGGTTTTACATGAGATTTGAAGACAAAATGAAAACATATCAAATAAAGTCAAAAGCAATT

Function

NR:

description
protein Wnt-2-like isoform X1

GO: NA

KEGG:

id description
K00182 WNT2; wingless-type MMTV integration site family, member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603917.2 False 2951 mRNA 0.47 5 48804907 48815013
XM_021603926.2 True 2519 mRNA 0.48 5 48804908 48815013

Neighbor

gene id symbol gene type direction distance location
LOC110532376 NA coding upstream 6403 48759039 ~ 48798504 (+)
cttnbp2 cttnbp2 coding upstream 98338 48635495 ~ 48706569 (+)
LOC110524313 LOC106573128 coding upstream 208299 48591020 ~ 48596608 (+)
LOC110524302 LOC106573126 coding upstream 213993 48552081 ~ 48590914 (+)
LOC110524291 LOC106573129 coding upstream 295263 48483885 ~ 48510535 (+)
LOC110524405 LOC106573116 coding downstream 620749 49435762 ~ 49440232 (+)
kitlg scf coding downstream 851519 49666532 ~ 49702958 (+)
LOC110524421 NA coding downstream 1008897 49823910 ~ 49834003 (+)
LOC118964840 NA coding downstream 1032607 49847620 ~ 49848979 (+)
LOC118964841 NA coding downstream 1222510 50037523 ~ 50184257 (+)
G52450 NA non-coding upstream 178110 48626598 ~ 48626797 (+)
G52390 NA non-coding upstream 206056 48598196 ~ 48598851 (+)
G52431 NA non-coding upstream 230648 48573919 ~ 48574259 (+)
G52395 NA non-coding upstream 264019 48530447 ~ 48540888 (+)
G52546 st7 non-coding downstream 2735 48817748 ~ 48819992 (+)
G53252 NA non-coding downstream 250681 49065694 ~ 49079733 (+)
G53308 NA non-coding downstream 275107 49090120 ~ 49090352 (+)
G53318 NA non-coding downstream 292492 49107505 ~ 49107861 (+)
G53349 NA non-coding downstream 355328 49170341 ~ 49170549 (+)
G52324 NA other upstream 421650 48380542 ~ 48383257 (+)
G52080 NA other upstream 779949 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 1546009 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 1943443 46854230 ~ 46861465 (+)
G50010 LOC106573227 other upstream 2812016 45992273 ~ 45992891 (+)
G53181 NA other downstream 78484 48893497 ~ 48893912 (+)
LOC110524575 fgf3 other downstream 2634809 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 4851202 53632830 ~ 53705421 (+)
G59031 NA other downstream 5173127 53988140 ~ 53988597 (+)

Expression


Co-expression Network