G52300


Basic Information

Item Value
gene id G52300
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48354149 ~ 48354514 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU58417
atcctctgtttggtccaacacccaggacaatggatcagatcccagccggcgacccaaaacaacggcgccgcagaagggcGAAACTGAAAGcttgaaccactgcttttaatcagggcaaggtgtccggaaacatgaccgaatacaaacagtgtagctattccctccgcaaggcaatcaaacaagctaagcgtcagtatagagacaaagtagaatcgcaattcaacggctcagacacgagaggtatgtggcagggtctacagtcaatcacggactacaaaaggaaaaccagccccgtcacggaccaggatgtcttgctcccagacaaactaaacaacttctttgctcgctttgaggacaacacagtgc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58417 True 366 lncRNA 0.50 1 48354149 48354514

Neighbor

gene id symbol gene type direction distance location
LOC110524253 LOC106573262 coding upstream 64588 48256867 ~ 48289561 (+)
LOC118964788 NA coding upstream 190408 48147399 ~ 48163741 (+)
LOC110524199 LOC106573256 coding upstream 340803 47983046 ~ 48013346 (+)
rpgrip1l rpgrip1l coding upstream 375844 47949465 ~ 47978305 (+)
LOC110524181 LOC106573253 coding upstream 502990 47824536 ~ 47853332 (+)
LOC110524291 LOC106573129 coding downstream 129371 48483885 ~ 48510535 (+)
LOC110524302 LOC106573126 coding downstream 197567 48552081 ~ 48590914 (+)
LOC110524313 LOC106573128 coding downstream 236506 48591020 ~ 48596608 (+)
cttnbp2 cttnbp2 coding downstream 280981 48635495 ~ 48706569 (+)
LOC110532376 NA coding downstream 404525 48759039 ~ 48798504 (+)
G52292 NA non-coding upstream 10799 48343098 ~ 48343350 (+)
G52289 NA non-coding upstream 13307 48340260 ~ 48340842 (+)
G52284 NA non-coding upstream 20602 48333269 ~ 48333547 (+)
G52277 NA non-coding upstream 29337 48324579 ~ 48324812 (+)
G52222 NA non-coding upstream 132200 48219454 ~ 48221949 (+)
G52395 NA non-coding downstream 175933 48530447 ~ 48540888 (+)
G52431 NA non-coding downstream 219405 48573919 ~ 48574259 (+)
G52390 NA non-coding downstream 243682 48598196 ~ 48598851 (+)
G52450 NA non-coding downstream 272084 48626598 ~ 48626797 (+)
G52080 NA other upstream 329191 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 1095251 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 1492685 46854230 ~ 46861465 (+)
G50010 LOC106573227 other upstream 2361258 45992273 ~ 45992891 (+)
G49335 LOC106573225 other upstream 2617369 45730241 ~ 45736780 (+)
G52324 NA other downstream 26028 48380542 ~ 48383257 (+)
G53181 NA other downstream 538983 48893497 ~ 48893912 (+)
LOC118964841 NA other downstream 1683060 50037523 ~ 50184257 (+)
LOC110524575 fgf3 other downstream 3095308 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 5311701 53632830 ~ 53705421 (+)

Expression


Co-expression Network