RNA id: TU58580


Basic Information

Item Value
RNA id TU58580
length 200
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G52450
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 48626598 ~ 48626797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgaaaccaaaatataactttttggtaaaaactcaactcgtcgtgtttggaggacaaagaatgctgagttgcacccaaagaacaccatacctactgtgaagcatgggggtggaaacatcatgctttggggctgtttttctgcaaagggaccaggacgactgatccgtgtaaaggaaagaatgaaaagggccatgtatcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58520 lncRNA upstream 27747 48598196 ~ 48598851 (+) True G52390
TU58561 lncRNA upstream 52339 48573919 ~ 48574259 (+) True G52431
TU58525 lncRNA upstream 85710 48530447 ~ 48540888 (+) True G52395
TU58487 lncRNA upstream 116063 48508444 ~ 48510535 (+) True LOC110524291
TU58417 lncRNA upstream 272084 48354149 ~ 48354514 (+) True G52300
TU58684 lncRNA downstream 190951 48817748 ~ 48819992 (+) False G52546
TU58686 lncRNA downstream 190951 48817748 ~ 48819992 (+) True G52546
TU59463 lncRNA downstream 438897 49065694 ~ 49079733 (+) True G53252
TU59521 lncRNA downstream 463323 49090120 ~ 49090352 (+) True G53308
TU59531 lncRNA downstream 480708 49107505 ~ 49107861 (+) True G53318
XM_021603847.2 mRNA upstream 29990 48591020 ~ 48596608 (+) True LOC110524313
XM_036979176.1 mRNA upstream 35684 48552081 ~ 48590914 (+) True LOC110524302
XM_036979164.1 mRNA upstream 116954 48483885 ~ 48509644 (+) False LOC110524291
XM_036979160.1 mRNA upstream 116954 48483886 ~ 48509644 (+) False LOC110524291
XM_036979138.1 mRNA upstream 337037 48256867 ~ 48289561 (+) True LOC110524253
XR_005051992.1 mRNA downstream 8698 48635495 ~ 48705096 (+) False cttnbp2
XM_036979261.1 mRNA downstream 8702 48635499 ~ 48706569 (+) True cttnbp2
LOC110532376 mRNA downstream 132242 48759039 ~ 48798504 (+) True LOC110532376
XM_021603917.2 mRNA downstream 178110 48804907 ~ 48815013 (+) False LOC110524349
XM_021603926.2 mRNA downstream 178111 48804908 ~ 48815013 (+) True LOC110524349
TU58443 other upstream 243341 48380542 ~ 48383257 (+) True G52324
TU58177 other upstream 601640 48006674 ~ 48024958 (+) True G52080
TU56739 other upstream 1367700 47227246 ~ 47258898 (+) True LOC110520864
TU56623 other upstream 1765134 46857908 ~ 46861464 (+) True LOC110524042
TU55850 other upstream 2633707 45992505 ~ 45992891 (+) True G50010
TU59387 other downstream 266700 48893497 ~ 48893912 (+) True G53181
TU60888 other downstream 1410777 50037574 ~ 50083996 (+) True LOC118964841
TU62774 other downstream 2823025 51449822 ~ 51450935 (+) True LOC110524575
TU65446 other downstream 5039418 53666215 ~ 53671273 (+) True LOC118936380
TU65626 other downstream 5361343 53988140 ~ 53988597 (+) True G59031

Expression Profile