G54800


Basic Information

Item Value
gene id G54800
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50285082 ~ 50285537 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU61065
ccaaataactgattaaaaaaatattgttttgcaATGAAAGCAAGTAGTGGtgagtgggtaaaatcactggggaaacCAAGCCAGGAAAAAAATCCAATCTATGTGCTGTGattgttgtttgctctataacagTTAATTTGCCTTGCCACTGTGATGTATAGGcgtaaggccgagacaataacacacagaataaattcaaccacatctttgtttcatcacaaaaccagagagcaacatcagtttggtgaagtccacaaagcatattagatctaacaaacagttacatgacctacagcatggtcaagcaagttaatgtttccgacatattcagactactaaacaactattgattcaGGACCACGGAGAGCTGCAGCAAGTcgaaaagaaaacaggagctgcctacACTATTCCAACActatttcaacatcatcaaatcacctatgcttagtctaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61065 True 456 lncRNA 0.48 1 50285082 50285537

Neighbor

gene id symbol gene type direction distance location
LOC110524434 LOC106573111 coding upstream 54017 50226356 ~ 50231065 (+)
LOC118964841 NA coding upstream 201542 50037523 ~ 50184257 (+)
LOC118964840 NA coding upstream 436103 49847620 ~ 49848979 (+)
LOC110524421 NA coding upstream 451079 49823910 ~ 49834003 (+)
kitlg scf coding upstream 582124 49666532 ~ 49702958 (+)
LOC110524453 LOC106573109 coding downstream 170019 50455556 ~ 50509791 (+)
LOC110524456 LOC106573106 coding downstream 245111 50530648 ~ 50592851 (+)
LOC110524482 LOC106573107 coding downstream 315098 50600635 ~ 50675495 (+)
LOC110524496 LOC106573105 coding downstream 506659 50792196 ~ 50800380 (+)
c1h11orf49 cssa16h11orf49 coding downstream 571043 50856580 ~ 50871347 (+)
G54732 NA non-coding upstream 91353 50193361 ~ 50193729 (+)
G54651 NA non-coding upstream 193516 50059362 ~ 50091566 (+)
G54645 NA non-coding upstream 219771 50049094 ~ 50065311 (+)
G54571 NA non-coding upstream 297476 49987392 ~ 49987606 (+)
G54835 NA non-coding downstream 43021 50328558 ~ 50329351 (+)
G54841 NA non-coding downstream 51450 50336987 ~ 50337328 (+)
G54878 NA non-coding downstream 101561 50387098 ~ 50387332 (+)
G54879 NA non-coding downstream 102337 50387874 ~ 50388305 (+)
G54889 NA non-coding downstream 113731 50399268 ~ 50399486 (+)
G53181 NA other upstream 1391170 48893497 ~ 48893912 (+)
G52324 NA other upstream 1901825 48380542 ~ 48383257 (+)
G52080 NA other upstream 2260124 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 3026184 47227246 ~ 47260224 (+)
LOC110524575 fgf3 other downstream 1164285 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 3380678 53632830 ~ 53705421 (+)
G59031 NA other downstream 3702603 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 3759312 54044813 ~ 54089850 (+)
G59963 NA other downstream 4435651 54721188 ~ 54721463 (+)

Expression


Co-expression Network