G53899


Basic Information

Item Value
gene id G53899
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49554714 ~ 49585866 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU60128
cattaaaaatcctacaatgtgattttctggatttttcatCTCATTTtgtctcatagttgaagtgtacctatgatgaaaattacaggcctctctcgtctttttaagtgggagaccttgcacaattggtggctgactaaatacttttttgccccactgtatgtgtatgtatatgtatgcatgcgtgtatggatatatataatTACCCCCacaaatatgggggattggaaatgatgcagacaattacattggaagcaacattctgtcacgacttctgccgaagtcgttgcctctccttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60128 True 296 lncRNA 0.40 2 49554714 49585866

Neighbor

gene id symbol gene type direction distance location
LOC110524405 LOC106573116 coding upstream 114482 49435762 ~ 49440232 (+)
LOC110524349 LOC106573123 coding upstream 739701 48804907 ~ 48815013 (+)
LOC110532376 NA coding upstream 756210 48759039 ~ 48798504 (+)
cttnbp2 cttnbp2 coding upstream 848145 48635495 ~ 48706569 (+)
LOC110524313 LOC106573128 coding upstream 958106 48591020 ~ 48596608 (+)
kitlg scf coding downstream 80666 49666532 ~ 49702958 (+)
LOC110524421 NA coding downstream 238044 49823910 ~ 49834003 (+)
LOC118964840 NA coding downstream 261754 49847620 ~ 49848979 (+)
LOC118964841 NA coding downstream 451657 50037523 ~ 50184257 (+)
LOC110524434 LOC106573111 coding downstream 640490 50226356 ~ 50231065 (+)
G53872 NA non-coding upstream 38634 49515610 ~ 49516080 (+)
G53817 NA non-coding upstream 130073 49424385 ~ 49424641 (+)
G53811 NA non-coding upstream 134925 49419588 ~ 49419789 (+)
G53790 NA non-coding upstream 160645 49393851 ~ 49394069 (+)
G53785 NA non-coding upstream 169808 49384577 ~ 49384906 (+)
G54041 NA non-coding downstream 207381 49793247 ~ 49796208 (+)
G54472 NA non-coding downstream 336505 49922371 ~ 49922630 (+)
G54476 NA non-coding downstream 338304 49924170 ~ 49924397 (+)
G54481 NA non-coding downstream 341053 49926919 ~ 49927144 (+)
G54507 NA non-coding downstream 360741 49946607 ~ 49946846 (+)
G53181 NA other upstream 660802 48893497 ~ 48893912 (+)
G52324 NA other upstream 1171457 48380542 ~ 48383257 (+)
G52080 NA other upstream 1529756 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 2295816 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 2693250 46854230 ~ 46861465 (+)
LOC110524575 fgf3 other downstream 1863956 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 4080349 53632830 ~ 53705421 (+)
G59031 NA other downstream 4402274 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 4458983 54044813 ~ 54089850 (+)

Expression


Co-expression Network