G53790


Basic Information

Item Value
gene id G53790
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49393851 ~ 49394069 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU60018
gattttcaatcacagctttcatgtgtcttggcatgctctccaccagtctttcacattgatgtcGGGTGATTTTATGACACTCCTGGTGCAAAAATGAAAGCGGCTCAgctttgtttgatggcttgtgaccatccatcttcctcttgatcacattccagaggttttcaatggggttcaggtctggagattgggctggacatgacagggtcttgatctggt

Function

NR:

description
PREDICTED: ELKS/Rab6-interacting/CAST family member 1-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU60018 True 219 lncRNA 0.47 1 49393851 49394069

Neighbor

gene id symbol gene type direction distance location
LOC110524349 LOC106573123 coding upstream 578838 48804907 ~ 48815013 (+)
LOC110532376 NA coding upstream 595347 48759039 ~ 48798504 (+)
cttnbp2 cttnbp2 coding upstream 687282 48635495 ~ 48706569 (+)
LOC110524313 LOC106573128 coding upstream 797243 48591020 ~ 48596608 (+)
LOC110524302 LOC106573126 coding upstream 802937 48552081 ~ 48590914 (+)
LOC110524405 LOC106573116 coding downstream 41693 49435762 ~ 49440232 (+)
kitlg scf coding downstream 272463 49666532 ~ 49702958 (+)
LOC110524421 NA coding downstream 429841 49823910 ~ 49834003 (+)
LOC118964840 NA coding downstream 453551 49847620 ~ 49848979 (+)
LOC118964841 NA coding downstream 643454 50037523 ~ 50184257 (+)
G53785 NA non-coding upstream 8945 49384577 ~ 49384906 (+)
G53678 NA non-coding upstream 92982 49300620 ~ 49300869 (+)
G53659 NA non-coding upstream 108308 49285279 ~ 49285543 (+)
G53654 NA non-coding upstream 110886 49282454 ~ 49282965 (+)
G53375 NA non-coding upstream 129772 49203295 ~ 49264079 (+)
G53811 NA non-coding downstream 25519 49419588 ~ 49419789 (+)
G53817 NA non-coding downstream 30316 49424385 ~ 49424641 (+)
G53872 NA non-coding downstream 121541 49515610 ~ 49516080 (+)
G53899 NA non-coding downstream 160645 49554714 ~ 49585866 (+)
G54041 NA non-coding downstream 399178 49793247 ~ 49796208 (+)
G53181 NA other upstream 499939 48893497 ~ 48893912 (+)
G52324 NA other upstream 1010594 48380542 ~ 48383257 (+)
G52080 NA other upstream 1368893 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 2134953 47227246 ~ 47260224 (+)
LOC110524042 NA other upstream 2532387 46854230 ~ 46861465 (+)
LOC110524575 fgf3 other downstream 2055753 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 4272146 53632830 ~ 53705421 (+)
G59031 NA other downstream 4594071 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 4650780 54044813 ~ 54089850 (+)

Expression


Co-expression Network