G55070 (LOC106573111)


Basic Information

Item Value
gene id G55070
gene name LOC106573111
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 50718682 ~ 50720223 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU61349
CCCAATAGTCTAATTgtttcagataaaaaaaaaaatgtaggctactgtatgcaAAGTATAAAGGAATATAAACCATAAAGCATCCAATATAATCAATATATATAAATGAATACAACACTTTAGTCCAGATAGTATGAGCCCTCTGTGTGCCAACTATGTCGTCCACAGACTTATTTTCCTAATAATCAGCCATTCATTCTGACTGGCAGTCACCACAATACGAACACACTGGATGTCAAAGGCAATCTTGTGGTCCACGTCTTGAACGTCAATGTTGCCATTTTTAAACTCCCCTAACGTGATGTAGGAAGAACACTGCCTTCCTCTCTTTGTCCCCACCAGCTTCTCTCCTACTTCCAGAGCTCCATGGTGCAGGATATCATTCTGACGATCGTCCGTTCCTGTCAAGATTTTGATATTGCTAATATTGCTTGGTTCGTGAAAGACAATGACAAAGAAGTCTCCGGTAGAGGGGGGTTTCCCCCAAAAGTATTCGTCCACACTGCTATAAGCCTTGGTGGCGTCATAGTTTTCAAATACATTAATGTTTGTGTACAGGCTGGCAGGAGGGTTGTCAGGGATATCAATAGAGTCCTCTTCAAAGTCATCATCCTTCAACTTGTTCTCTGTCCCCTTATATGAGGAGTAGTAGCCCATGTGCTGGAACAGAGAGGGCTTGAAGCGGATCACATTTTTCTGGGCCAACAGGCCCCGGAAGTGAATAAGGAGCCAGTCGCAAGGCATCTCCTGGTAGAACATGAGCAGGAAGTGGACCAGGCGCGGCAGGTCTCTTGATTGGTAGAGCTTCCCTATGTAGCCAAGCTTGGAGAATTCCAGCATCACCCAGTAGGAGCCTTCCCTGGAGGTGACCACCTTCTTCAGGGATGTCAGGAAGTTCCGTGAGCAGAGCACATCGTCCTCCAGCATCATGTAAAAATCTGAGAGGTTGGTGCAGAAGTTGAGGAGGAAGGCGTAGTCCACGTTCTGCTTGGAGCGGAAGCGTACCCTGTCCTCTGGGTCGTCGTAGTTCCTTTTCAGCCCATCCAGTGATGGGTAGTACTCCTCAGGGGCATGGATCACTAGGAGACGCCCTGCGATGATGTGGTGGGCAAACTTCCTGGAGATGTCCTGCACCAGCTTTTCACACCAGGCCAGGTCAAAGTCTGCCAGGTGAACCACCACCACAATCTCTTTCAGTTCCTCATAACTGGACTGGTCAAAAATGGATTTGATCGTCTCCATGAGGTAATTCCCTTTTTTttttcCGGGGCAGTGGATTCCCAGCGAGGTAACGGTATGTGATGTTTATGGTTCCAGAGAAATTTGTGAGGTCTCTAAAGTTGTGAACATATCTCTCAGAGTTTGAAGGATGCATCAGCTGTCTTTTACCCGCCTC

Function

NR:

description
alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61349 True 1396 lncRNA 0.30 2 50718682 50720223

Neighbor

gene id symbol gene type direction distance location
LOC110524482 LOC106573107 coding upstream 44507 50600635 ~ 50675495 (+)
LOC110524456 LOC106573106 coding upstream 125831 50530648 ~ 50592851 (+)
LOC110524453 LOC106573109 coding upstream 208891 50455556 ~ 50509791 (+)
LOC110524434 LOC106573111 coding upstream 487617 50226356 ~ 50231065 (+)
LOC118964841 NA coding upstream 635142 50037523 ~ 50184257 (+)
LOC110524496 LOC106573105 coding downstream 71973 50792196 ~ 50800380 (+)
c1h11orf49 cssa16h11orf49 coding downstream 136357 50856580 ~ 50871347 (+)
LOC118964313 NA coding downstream 271760 50991983 ~ 50993119 (+)
LOC110524544 LOC106573154 coding downstream 351473 51071696 ~ 51075445 (+)
LOC118964319 NA coding downstream 434284 51154507 ~ 51155396 (+)
G54987 NA non-coding upstream 40570 50677338 ~ 50678112 (+)
G55023 NA non-coding upstream 77904 50640560 ~ 50640778 (+)
G54907 NA non-coding upstream 289085 50429239 ~ 50429597 (+)
G55101 NA non-coding downstream 57687 50777910 ~ 50779569 (+)
G55115 ckap5 non-coding downstream 89923 50810146 ~ 50817448 (+)
G55664 NA non-coding downstream 132058 50852281 ~ 50852604 (+)
G55690 NA non-coding downstream 170541 50890764 ~ 50891884 (+)
G55731 NA non-coding downstream 231510 50951733 ~ 50951962 (+)
G53181 NA other upstream 1824770 48893497 ~ 48893912 (+)
G52324 NA other upstream 2335425 48380542 ~ 48383257 (+)
G52080 NA other upstream 2693724 48006674 ~ 48024958 (+)
LOC110520864 NA other upstream 3459784 47227246 ~ 47260224 (+)
LOC110524575 fgf3 other downstream 729599 51449353 ~ 51451460 (+)
LOC118936380 LOC106581842 other downstream 2945992 53632830 ~ 53705421 (+)
G59031 NA other downstream 3267917 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 3324626 54044813 ~ 54089850 (+)
G59963 NA other downstream 4000965 54721188 ~ 54721463 (+)

Expression


Co-expression Network