G57416 (LOC106573083)


Basic Information

Item Value
gene id G57416
gene name LOC106573083
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52333931 ~ 52339600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU63814
TTTCAAGTTACTTGGAAATTCGTTATTTCACTACGTGGAGAAacttaaatacaaataaattgtTAGTAAAAACCTTGAAACTGTTTTAGAATAAGAACACCAAACCATTTTCAATACGGTCACAAAGTGGAAGAGTTTGGCAGACCTTGTGCTGCTCATATAAGCAACACAAACCAGAATGACACAGTACATCGAGGGGTACTTCTCTTACACTCCAAAGTCCATTACATCTCAAGGCTTCCAGAGTACTGTAATGGTTTCATTTAGTACAAAATAGGGACATTTCGGGAAAAACACAACGATATCGCGGACAAATGGAAACCATCCAAATGTGAACTCATGAGCAACGTCTTGTCCTGTTAGTTACAATAATGCACAATGTTCACAGCAAAGAAAAAAAGAAATAGtaacaaaaaaaattatatttattCTATAGAAGTAGTCTATATTGAACACAGCTCTCTTAGCCAGTCAAAACCTTCTCATGCACAGTTCTGCCTCCCAGGCTCTTAAAAGGGATAGTTGATCAAATGTTTGGCTGAACTATCCATTTTAAGCTCCTCTTGCAGTGGTTTTCTGTACAGTCAATTAGAGTATATATTTACAAATGCGACAGATAATGTTCAttcaaaaaaaaacaacaacgtaAAACTTGATGCAAGTTAAAATAAACATCTCGATCCCTTCCCTTATCACACCAAAGGCCATCAAATGTAGTTAGTATAAGTGACTCGCATGAATATTATCCCCtcaacacgcacgcacacacagcgcAGAAATATGATCAAACACTTCGTAGGTGACCCGAACCTTGAAAAAATGTACAGAGCCTTGACCGTGTCCAATATGGCAACCCTAAGCCGCTTATCTGAGGGAGAAGCATTTTGAAGCTTTTCAAAAGATGACTGTATGAATTATTCCTTAATTTATGGAGTCCTCCATCCTTTCATCCTTCCTAGCTGAACCCATCATCCTCAGAGTATGACTATTGCTTTATGGGCATTCCACTCACTGAACTCTGGGTAAAACGGTCTCTTTGTGAATTAATCTAGACTGAACTGAATCAGAGTTCTGTATTAAAAGGCACCGTACTGCTGAAGGCCACACAGCACCACAAATAAACGCAACATTTTGAAAGAAAAGCGAAAGAAAATAGTTGGATGTCAGTACATGCACTTTGGGTcgcacagaaagagccataaagTCACCGTCAGGTCATGGGATGTGCAACCACAGGAAGTAAGGTCACATGCAGGTCAaaggttatgatgatgatgtcatgacaGCATGCCGCACTTCAGCATTTGCAGTGATCAAAACAAAGGTGACATGTgagcaccagtggaggctggtgtttGATACCGTCCCGTTAATTTAATTTGAGCCATTACGGCGAGCCTGTCCTCCCCCATTTAAAGTGGCACCAGCATCCCCTGGTGAGGGCGTGGATGCAGCGACTGATGTAACTTGAGTCAAGCTTGATTGAGCCTGCTTGGAGTCGGAATCACAGATTCAGGCAGGAGAATACTTTTAGGAGCTCACTGGACATCATCCTGCACGGTAGATGCAACTGTCTTGCAAAAAGACATGGAATGATGTTCATGTACTTAGTAACATGTTTCACCACCATGTCGACAGACACTGATGCCTCTTTGCGGTTGCCCTGAAGGACAAAGTACCTCGAACACACACACTAATATCAAGATAATGCTTTGACCGGAAAAACCATATGGCAAACCCAAATAATTCAAATGTGTACCCTATAGCAAGATAAAGATAAATAGACAATAGCTTCCATGTAATAATCGACTCATTTGTGTTAATATGTGTTTGTGCATCATTTCAGTGGTCGCTACTAAGTCAACAGGCTACAGAGAATAAAAGAGTTGGAACAGTCTCCGCAATCCCTCCACAAATTCAGTGATTTCCAAATGATAACGTACAATCCTCCAGTGTAGAGAGTCTCACACGTGTCTGTTATGTGTCTCTTAATTAAGAAGTCTCCTATGTGTTTGTGACAGTAGTGTGCGGATGGGCGGGGCATGGGATGACAATAAGCCACAAGGTGACGTGAGGAACAGCCCTGTGAAGATGGCGAAGGGAACAGTCACTGGAGAGCTCCTACAGGTTTGGATGTCCAAATGTCTGGCTACACAAACCTATGGACCTGGCTGTTTAACCAGCTGGCTACAAAGGAGTTCAGTTTACTGCAGCACCGCCTACTGGCCTGGCTGCCTATCCCTCCACCTGGCTGACCTACTGATCAACCAGCCGGCTACACAAAGGAGTTCATAGCGGAGGTATTAACAGGGGACGGGGCCTCTGAGCTTTCGTGGCCCCCAGCAGTGTCCCTGGCGGAGCTCTTCCCGCTATACTGTCCAATAAAAGACCCATCCTCGTTGAACTGGCCGTCTCCACCATCGCCGCCGTAGTCTACTAAACTGTCGTCACTGTTGTCCCTGTGCACCGTCCCGTTAGACGGTGTGCGGCTCCCTTTTAACGGCTTATGGTCCTCAGTGTCACTGTATTCCCCGAAAGTACAGTCATCCTCTTTCATGGGCTGGAACTCTGGGTCTGTGTGAGCGTCCTCCT

Function

NR:

description
PREDICTED: neuronal cell adhesion molecule-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU63814 True 2592 lncRNA 0.46 2 52333931 52339600

Neighbor

gene id symbol gene type direction distance location
LOC110524629 LOC106573088 coding upstream 415947 51900323 ~ 51917984 (+)
LOC110524623 LOC106573089 coding upstream 439014 51888400 ~ 51894917 (+)
LOC110524604 LOC106573091 coding upstream 482156 51801997 ~ 51852291 (+)
trnap-agg NA coding upstream 703028 51630832 ~ 51630903 (+)
trnap-ugg-2 NA coding upstream 703692 51630168 ~ 51630239 (+)
LOC110524688 LOC106573082 coding downstream 180906 52520506 ~ 52524718 (+)
LOC110524698 LOC106573080 coding downstream 189178 52528778 ~ 52551209 (+)
LOC110524804 NA coding downstream 359080 52698680 ~ 52702647 (+)
LOC110524813 LOC106573076 coding downstream 367950 52707550 ~ 52722838 (+)
LOC110524844 LOC106573071 coding downstream 543270 52882870 ~ 52889860 (+)
G57364 NA non-coding upstream 74225 52241814 ~ 52259706 (+)
G57337 NA non-coding upstream 125045 52202704 ~ 52208886 (+)
G57312 NA non-coding upstream 172092 52161552 ~ 52161839 (+)
G57262 NA non-coding upstream 220822 52112875 ~ 52113109 (+)
G56985 NA non-coding upstream 340619 51991109 ~ 51993312 (+)
G57675 NA non-coding downstream 111816 52451416 ~ 52451669 (+)
G57690 NA non-coding downstream 122589 52462189 ~ 52462598 (+)
G57695 NA non-coding downstream 125703 52465303 ~ 52465565 (+)
G57723 NA non-coding downstream 143834 52483434 ~ 52483650 (+)
G57724 NA non-coding downstream 144206 52483806 ~ 52484224 (+)
LOC110524575 fgf3 other upstream 882996 51449353 ~ 51451460 (+)
LOC118964841 NA other upstream 2249935 50037523 ~ 50184257 (+)
G53181 NA other upstream 3440019 48893497 ~ 48893912 (+)
G52324 NA other upstream 3950674 48380542 ~ 48383257 (+)
G52080 NA other upstream 4308973 48006674 ~ 48024958 (+)
LOC118936380 LOC106581842 other downstream 1326615 53632830 ~ 53705421 (+)
G59031 NA other downstream 1648540 53988140 ~ 53988597 (+)
LOC110525327 LOC106573036 other downstream 1705249 54044813 ~ 54089850 (+)
G59963 NA other downstream 2381588 54721188 ~ 54721463 (+)
G61202 LOC106573044 other downstream 3565908 55905508 ~ 55923376 (+)

Expression


Co-expression Network