XLOC_020182


Basic Information

Item Value
gene id XLOC_020182
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 8838425 ~ 8854534 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042058
CGACAAGAGACTGATTATTCAGCTTCAGTCTCTTCCTCCTCTTACGGTAAAGTCTGGAGGGGAAACCGCTGAGGATTCTTGGGCATGCGCACATCAATGTAGATTTCTTCCTCCACTGACGGTAAAAGGGGGAAGGGCAGCGATTCTTGGGCATGCGCAGTTGCGCACATCAATGTAGATTTCTTCCTCCACTGACGGTGAAAGAAGGCTGGAGGGGAAACAGCTGCGGATTCTTTCTTGGGCATGTGCATTGCGCACACCAATGTAGAGAAAGTTTGTGACGCTGCTCAACAATAATCAGCATTTTTGTTActgtgtagatgttaataaaacaaaatttaattagttatttaataaataaatctagttAACTTCTGGTTGAACTAAGGAAAACATTTCGTCAACACCATGCCCTTGTGTCTTCTGAAGACCTAAGTGTGTTTAAGGAAGAAATGTTAAAGTTTTACCAACACTGCTATTTTACCAATTTTAGTAGCTATTTATCTTTAGTTTTGGCTTCATATTTGTCTTGGAATAAGACTGAGTGTGTGTCTTGAGTGCTAACTTGCATTATGCAAACTTGCTAACTTTCTTTTTAATCAGCTATGTTTTATATTACGTATAAGAGACTTTATAATCGGGCAGATAAAGAAGAATAAGCTCAAAAAGAGATTGTCAATGGTTTTACCAGTACATGTGGGGGCGTCCACTGTTTTGTACTTGCCAATGTAGTCAAACGAAATACAGTATACAATTTTAAAGGTTAGTTTTAACTGAAATGTTTTCTCACATTTAAGTTTGCTAAACTATTTTCAGCGTTTAAAACTCACAGGTTTAACTGCGCACAAGTCTATATGAGGAACTCACATTTTAAACTGCAAATCTAGCTGTTCATTTTACCAGAAGCACTTTATGACCTTGCGCATGTACTATAGTTGCAGTTATTTCTGAGAGAAGTGTGAAGATATAATCGGCTCTTTCTCTCTGCTTATAGTGGACATCTAACCACAATTCAAGCTCGCACTGTTGACATGAGCAAGATCTAAAACACTATTTTCTTTCAGATGTAATAACAGAAAAAGGCCAGCAGAGTGAGAGCGAGAAATTCAGTTAAATAGCAGACCCTTCTATTTAACAACATTACTATCACTCACAGTTAAAGCAATAACAAGCTCACACTGATGCTGTTTATTGTTTCATTACCTGTGGCAGTCACAGTTGATGGAGGATTGGGATGGGAGGTGATGGGAGTGGGTGATGGAGAAGCTTGAAAAAATGTCAGGTAAAACAAAGGTAAAATAGATGCTTCTTTATAGTTAGTCTGTTGTTGAAGGAGAGCAGCTTTTATTCACTGAATTAAGGTTTAAAGTATGGTTTAAGAAACTTGTAAGAAAAGAAAGACaaaggaatatttaaaaatatgaagcTGTGACTTTCAAAGTAAAGATCTACTAAAGCACCcttgaaacattatttttatgtaatttccactgaaacatgaagacactGTGGGACATCAAGTAGCA
>TCONS_00042059
GGCGACTGACTGATTATGCAACATATCAGTCTCTTCCTCCGCTGACGGTAAAAAAGTCTGGAGGGGAAACAACTGCGGATTCTTGGGCATGCGCACATCAAATGCAGATTTCTTCCTCCACTGACGGTGAAAGAAGGCTGGAGGGGAAACAGCTGCGGATTCTTTCTTGGGCATGTGCATTGCGCACACCAATGTAGAGAAAGTTTGTGACGCTGCTCAACAATAATCAGCATTTTTGTTActgtgtagatgttaataaaacaaaatttaattagttatttaataaataaatctagttAACTTCTGGTTGAACTAAGGAAAACATTTCGTCAACACCATGCCCTTGTGTCTTCTGAAGACCTAAGTGTGTTTAAGGAAGAAATGTTAAAGTTTTACCAACACTGCTATTTTACCAATTTTAGTAGCTATTTATCTTTAGTTTTGGCTTCATATTTGTCTTGGAATAAGACTGAGTGTGTGTCTTGAGTGCTAACTTGCATTATGCAAACTTGCTAACTTTCTTTTTAATCAGCTATGTTTTATATTACGTATAAGAGACTTTATAATCGGGCAGATAAAGAAGAATAAGCTCAAAAAGAGATTGTCAATGGTTTTACCAGTACATGTGGGGGCGTCCACTGTTTTGTACTTGCCAATGTAGTCAAACGAAATACAGTATACAATTTTAAAGGTTAGTTTTAACTGAAATGTTTTCTCACATTTAAGTTTGCTAAACTATTTTCAGCGTTTAAAACTCACAGGTTTAACTGCGCACAAGTCTATATGAGGAACTCACATTTTAAACTGCAAATCTAGCTGTTCATTTTACCAGAAGCACTTTATGACCTTGCGCATGTACTATAGTTGCAGTTATTTCTGAGAGAAGTGTGAAGATATAATCGGCTCTTTCTCTCTGCTTATAGTGGACATCTAACCACAATTCAAGCTCGCACTGTTGACATGAGCAAGATCTAAAACACTATTTTCTTTCAGATGTAATAACAGAAAAAGGCCAGCAGAGTGAGAGCGAGAAATTCAGTTAAATAGCAGACCCTTCTATTTAACAACATTACTATCACTCACAGTTAAAGCAATAACAAGCTCACACTGATGCTGTTTATTGTTTCATTACCTGTGGCAGTCACAGTTGATGGAGGATTGGGATGGGAGGTGATGGGAGTGGGTGATGGAGAAGCTTGAAAAAATGTCAGGTAAAACAAAGGTAAAATAGATGCTTCTTTATAGTTAGTCTGTTGTTGAAGGAGAGCAGCTTTTATTCACTGAATTAAGGTTTAAAGTATGGTTTAAGAAACTTGTAAGAAAAGAAAGACaaaggaatatttaaaaatatgaagcTGTGACTTTCAAAGTAAAGATCTACTAAAGCACCcttgaaacattatttttatgtaatttccactgaaacatgaagacactGTGGGACATCAAGTAGCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042058 False 1526 lncRNA 0.37 3 8838425 8854534
TCONS_00042059 True 1455 lncRNA 0.36 2 8849129 8854534

Neighbor

gene id symbol gene type direction distance location
XLOC_020181 NA coding upstream 702 8821497 ~ 8837723 (+)
XLOC_020180 si:dkey-182g1.10 coding upstream 28929 8772363 ~ 8809496 (+)
XLOC_020179 si:dkey-182g1.2 coding upstream 68068 8753092 ~ 8770357 (+)
XLOC_020178 CR450686.6 coding upstream 104698 8728969 ~ 8733727 (+)
XLOC_020177 zmp:0000000652 coding upstream 135524 8701238 ~ 8702901 (+)
XLOC_020183 NA coding downstream 31514 8886048 ~ 8894141 (+)
XLOC_020184 NA coding downstream 72831 8927365 ~ 8953552 (+)
XLOC_020185 si:ch211-213a13.1 coding downstream 125421 8979955 ~ 8996337 (+)
XLOC_020186 rnh1 coding downstream 148556 9003090 ~ 9009188 (+)
XLOC_020187 si:ch211-213a13.2 coding downstream 154962 9009496 ~ 9057108 (+)
XLOC_020174 NA non-coding upstream 76795 8621298 ~ 8761630 (+)
XLOC_020176 CR450686.2 non-coding upstream 138495 8695096 ~ 8699930 (+)
XLOC_020171 NA non-coding upstream 263518 8570105 ~ 8574907 (+)
XLOC_020166 NA non-coding upstream 343066 8375766 ~ 8495359 (+)
XLOC_020189 NA non-coding downstream 211552 9066086 ~ 9066418 (+)
XLOC_020194 NA non-coding downstream 468223 9322757 ~ 9323817 (+)
XLOC_020195 NA non-coding downstream 486921 9341455 ~ 9343000 (+)

Expression


Co-expression Network