XLOC_020186 (rnh1)


Basic Information

Item Value
gene id XLOC_020186
gene name rnh1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9003090 ~ 9009188 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040146
aaagcaCTGAAAAGTGTGGAAAACCAGTCAGAAAAATGTGGGAGATTGGGCTGCACATtagaagtaaataataataataataataataataataataataataacaataataacagtaaatgGAAAATAATTAGCACAGTAAATAGGACACACAGTCGAATATTGATATGGAGAATCGTTTTGAACAGTCCTTGATGAATGATTAAAATcgattgtttatgtgtgtgttaagGGATTATGAATGCTGCAAGTGGTTTCACTTCACATTTGCTGATTCATGCTCCGGAGCTGAAGGGGCGGTAATGCACCAATTAGATGGACGAAACCCGCAGCTGAACgtgaaagaagaagaaaagaagccGCTTCTCTCAAAAGTTCACGCATATGTTTGTTCGTTTTGAACGTTTCACAACTTGTTGTTTTAATAAGTGAGCTTTATTTACAATTGAAGACATGCATTCAGCCCACCAAGAAGAACAGAAATGTAtaaagacagagtttattgaagaTTACAGTGAGAACAGGAGTGATTCAGAACCCTTCAGAATCAAACATGAAGACACTGATGCACAAAGAGaTCTGAAGGAGCACAGTGAAGAggaggagaaacatcatgtcaaacCTGAAGAAATCTCATTGAGTTGCTCTCAGAGCAAAAGTAAATTTCCAGACAGACAAACAGCCGCCAAAACGTTAATTTGCTCTCAGTGTGGAAAACAGTTCCCATGCAAACAAACACTTTCAGATCACATGAGAACTCACAGCAAAGAAAGTCCACACGTATGTGATGAGTGCGAGGAGAGTTTTACATTAGAAGAAGAGCTTAAGGATCACAGGAGAAAACACTGTGGGAACGCACAACACATTTGCGatctgtgtgggaagagtttctcaTTTAAAGTAAGTCTTAAGCGTCACATGAGCATTCATAGAGGAGAGAAGTACACATGCCTTCAATGTGGGAAGAATTTCACGTTAATCGGACAGCTTAAATATCACATGAAAATGCACAGCGACGAGACGGCATTCTCGTGTGaggagtgtgggaagagtttcagacataAAGGAAATCTTAAAcgtcacatgaagatccacaggGGAGACAAGCTATACTCCTGTGCTCAATGCGGGAAGAGCTTCTTATATAAAGCAAGTGTCAACCGGCACATGTGCATTCACAGCGGAGAGAAGCCGTACGCGTGTGATCAATGTGGAAAACGATTCAGAGTAAAAGAAAACTTTAATAACCACATGAAAATCCACAGCGGAGAGAAGCTGCACTTTTGTGAgcagtgcgggaagagtttcaggaTTAAAGCGTATCTTAAACGTCACGTAAAGATTCACACAGGAGACAGGCCGTACTCATGTGttcagtgcgggaagagtttctcGTATAAAGTAAGTCTCAAACATCACATGAGCCTTCACAATGAAGAAAAGCCATATGTGTGTGGTCAATGCGGGAGGAGTTTCAGACTTAATGGAAATCTTAAACGccacatgaagatccacagaGAAGATCAGAGATTTGCATTTAAAGTACATAACAGAGAGAAGCCTCACAAATGTAAaaagtgcgggaagagtttcacatATAAAACAAGTTTTACCCATCACATGAGTGTTTGTAGTGGAGAGAACCTGCACAAGTGTGAACAATGCGGAAAACGTTTCACAGTAAAATCCACCCTTATTGATCACATGAAAATCCACAGTGGAGAGAAGCTGCACAGGTGtgctcaatgtgggaagagtttcacacaAAAAGGACACCTCACTTACCACATGAAGATCCACTCAGGAGAGAAGCCGCACACTTGTGATCAGTGCGGGAGGAGTTTCAGACATGCAAACCGGCTTAAATCACATCTACATACTCATTCTGGAGAAAGACCTTATAACTGTGATCAGTGCAGCAAGACATTTGCTGGACCGGAAAACCTGAAGATCCACCTGAAGGTTCATGCTGAAAAGAAACAtcacgtgtgtttgtgtggaaaGAGCTTTTCAAGACTGGGAGCTTTAAAGGTACACCAGAAAAGACACAGAGAAGTGACTTGATTAGTTAGTTAATGAATTGAAACTGCAGGAATTTACACAAAAAAGTGTTCAtacactgactacgtttacatagaCACCAGTAATCCaataatttgccttaatctgaatgtCAATAatgtgattaaggtgtttacatgagttacaTTCTAAGTGTTCCTTTTATCATATTGTTTTATATCTTAAAGGcgaattaccggtttgtaaacattcaggatgtgtgCGCAATGCGCAtagaggttgcagaaaaaaacggGGAGGGAATGACATCTGATATGGTACAGAGATTGTttttgtattagagataagttatattgatgacatattatatattattttcataatgctttcagcgtattataacagctcgtcacccagtgataagcacagttatttggCAAAATTGATGTTAAAGTGAGTGGCAtttgtctgacaggtccatttgcgatagcaccctcccaatggatattggcggggcggactggccatagggagcaccaGGACATTTTCTGGTGGCCTGATGGTCAATCTGGCTTGCCACCGTGACTCTGGCCTGCCGCGCAACACCCATATAACACCCTGAATAACAGTAACTTTTTCCAGGGTGAAAATGCTGTCCCAGTCCACCCCTGGATATTGAATAAGTCGAAATGGTCAAGCATCCAGCccaaaatatacaactatctcattgaaagTCCAAaggattttacaagagagaagttattaaaggcctacaagtctttggagaCCTACTATTTTGTTCTGTGTAGTCATGTGGacaaaataatgttccatgattaccagattcaaaactttgcaGTGCTAGAAACCGAGGTTCTGCCGAGTCAAAGAGAAGTAAAGAAGAtagaactgtacaaggcctggatAATCATCAACAAGCACAACAAGTGCATTCTGAtagtgaactgcacctgtacggcagggtatgtggacttacatttttacatttcattctaactattaagtgtctgcagtttaatttactgtatgtaactgtttttgctcaaatcattgctgcaatcaaaaacgagtaatgtgtatgaatGAACGCTTCTTCAGATAATAAGACAATGTACAAGTGGAATCATTATGGAAATATATATTACTccgcttttttttacatttgaacaaaagcgtgtagtcagaatttgccagggctATGAATAATTTCGACTCGCCCTTGGTTTGCAACTCGCCATAAAACCAAGGTGCAAACTACGGGGGGTAATTACCCCCCCTAGTTAACGCTCGATCCCTCCTTAAGGAGGTCAAAACAACATTTATTGGGGGTCAGTCTTCTAAATAGTGAGAAATAGTTTGTTTTGATCTGTATcttatgataatattaataattaaagtaatagATAAACACATTTAGGGTGACAtgttggtgcagtgggtagtgctgtcacacCTTTTTAGTGCAAACACCTTTTGGCCAAATCCATTTTGATGTCCTGTTGGTCAGAATGGATTATGTGACAGGCTGTGTACTGAgccccaaataaaaaaatgttgaacacaaaatttgTTGGCATTTGcaattaaagtaaatttaaattaattataaatgtgtGCTTGTTTGGTCataatttttatttgatatgtGTTTGAACCTTAACAATTAAGAatgacaattatttttaaattcttcAGATTTGTCCAAGCTGTTTTTaccataatgtatttttatttcatgccAAATCAGTAtgcttgtatatttttgtttcatttaagcaATGGATccacaaaaaaagattttcaatGTTTTTCTAATACAATCACAAAAGCATTGAAGAACAGACATAAAACAGACATTATATATTTTGTCTATGAGGTCGTTACAAATACTTATaaggtagcttttttttttttttaagt

Function

symbol description
rnh1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human RNH1 (ribonuclease/angiogenin inhibitor 1).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4718 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human RNH1 (ribonuclease/angiogenin inhibitor 1).

Ensembl:

ensembl_id ENSDARG00000086631

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040146 True 3963 mRNA 0.38 2 9003090 9009188

Neighbor

gene id symbol gene type direction distance location
XLOC_020185 si:ch211-213a13.1 coding upstream 6753 8979955 ~ 8996337 (+)
XLOC_020184 NA coding upstream 49538 8927365 ~ 8953552 (+)
XLOC_020183 NA coding upstream 108949 8886048 ~ 8894141 (+)
XLOC_020182 NA coding upstream 148556 8838425 ~ 8854534 (+)
XLOC_020181 NA coding upstream 165367 8821497 ~ 8837723 (+)
XLOC_020187 si:ch211-213a13.2 coding downstream 308 9009496 ~ 9057108 (+)
XLOC_020188 si:ch211-213a13.2 coding downstream 51511 9060699 ~ 9096248 (+)
XLOC_020189 NA coding downstream 56898 9066086 ~ 9066418 (+)
XLOC_020190 nlrp15 coding downstream 101810 9110998 ~ 9226882 (+)
XLOC_020191 si:ch211-250k18.5 coding downstream 230643 9239831 ~ 9255288 (+)
XLOC_020176 CR450686.2 non-coding upstream 303160 8695096 ~ 8699930 (+)
XLOC_020194 NA non-coding downstream 313569 9322757 ~ 9323817 (+)
XLOC_020195 NA non-coding downstream 332267 9341455 ~ 9343000 (+)
XLOC_020196 BX927329.2 non-coding downstream 342184 9351372 ~ 9359403 (+)
XLOC_020197 NA non-coding downstream 350711 9359899 ~ 9383484 (+)

Expression


Co-expression Network