XLOC_020191 (si:ch211-250k18.5)


Basic Information

Item Value
gene id XLOC_020191
gene name si:ch211-250k18.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9239831 ~ 9255288 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040160
AATCTTGAAatgaaaatacttacatttctgaAGGAGGAGCTCAAACAGTTTAAGAAAATAGTGTGCAACGAAAATGCTCAATACCTTGTAAAGGACTTTAATAAGAACAGAAGTTGTAAAAAAGAAGCAGCTCTTAATCTCACACTCTGCTTCCTGAGAGAAATGAAGCAAGATGAAGCTGCCGATACTCTAGAAGATAAGCTGGTCTTGGTTCATCAATTAAAATGTGACCTAAAGAAGAAGTATCagtgtgtgtttgaaggaattgcacagcaaggagactccacactccTGAAgaacatctacacagatctctatatcactcagggtgccAGTGAACAGGTCAATACTGAACATGAGGTCAGACAGATTGAAGTTGCTTCCAGACGTCATGAAGCTCaagagatacaggttgaatgcagACGTTTGTTTGAAGCGTCTGAACAAGAcaagcagatcagaactgtcctgacaaaaggagttgctggcatcgggaaatcagtctctgtgcaaaaatttgttctggattgggccgaaggaaaagaaaatcaagagatcagcttcatatttcctcttccattcagagagatgaacttaaaggagaaagaaaaacTCAGTTTGATGGAGcttataactcagtttttcccagagacaaAAGGACTGAACTTTACAAGAAGGAatcgattcaaagtcctgtttatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagatgTGTTGTGATGTTTTGTCACCAgcctctctggatgttctcctgacgaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctccTGACTGTATCGACAGagtgacagagatacgaggattcaatgatgcacaaaaggaggagtacttcagaaaaaGACTCACAGATGAGAATCAGGCCAAAGAAATCATTGATCATGTTAAACAATCAAAGAGTCTCTtcatcatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacatttTACAGGAGAAGAGAAATAATGATGTGAAAAACAATCAGGCTGATGACGCctccaaaacactgcaggaatCAAACACTGAAGAcactcccaagactctgacacagatgtacacacactttctgcgctttcagatccagcagagcagacgaaagtatgatggagaaaacacaccaGATGTGTCCTGGGATAAAGACgccatcctttcactggggaaactggcatTTCATCAGCTGAAAAACAGCAATCTGATCTTCTATGAGACAGACCTGGAAGCCTGTGGTATTGACGTTCATAAGGCCTCAGtttactcaggcatgtgtacccagatctttaagcaGGAAACAGGGATTgttcttggtaccatgtactgctttgtTCACTTGAGTGTTCAAGAGTTTATTGCAGCCCTTTATGCACATCTGATTCTGGACATCAACAAGAAAAGTGTGTTTGATCAAGACTCTAAAAGCAGAAATGAGTCCATGATTGATTTgctgaagactgcagtggacaaggcACTTGAGAGTGACAATGGGCACCTGGACCTTTtccttcgcttccttctcggcTTGTCTCTCCAGTCCAATCGgcaactcttacgaggcctgttgacacagcaagACCACAAtgaccagagcaaagaggaaatagTTCAGTACATCAAGCAGAAGTTTGAAGCGAATCTTTCTCCAGAGAGAttcatcaatctgttctactgtctgaatgaactgaacgaccaaactctggtgaaagagattcagtctcaccttAGCAAAGGAAGTCTCTCATCTGCTGatctttcacctgcccagtggtctgctttgacctttgtgttgttgacatcagaggaggagatggaggagtttgagcttcagaaattcaaGAAATCAGatgagtgtctcatcagactatcaaCAGTTGTCAAATCCTGCAGAAGAGCTCTgTTAAATAATTGTAACTTAACAGACAGAAGCTGCTCAGCTTTTGCTACAGTCCTTGGATCAGATAACAATCTAAAAGAGCTGAACATGAGCAAtaataatctgcaggattcaggagtaaAGCTGCTCTGCACTGGACTGAAGGATTGTAAACTGGAGAAACTCATTCTTTCAGACTGCAGTATCAGTGGAGAAGGTTATAaagctctggcttcagctctgagatcaaacccttcacacctgatagagctggatctcagaggaaatgatcctggacaatcGGGAGTGAAGGAGCTCACTGAGTTACTGCAGGATGCACTCTGTACACTGAAGACACTGAgGTTTTTAAGTCCTGTTGCTGATGAAGCCTGTCAGTTTGTGAAAGGAATTGTGGATATAAACCCGTTACTCCTGAAAGAACTGAATCTGAGTGATCATGAACTAGGAGACACACGAGTGAATCAACTCTCTGCTCTACTGCAGGATAAACACTGTAAACTCAACACACTCATGCTGAATAATAACAGAATTACAGAGTTaggttgtgctgctttggcttcagCATTTAATTCAAACTCTTCACACATGAAGGAGCTGTATCTGAGTGGGAATAAACTGGGAAGCTCAGGAGTATTAAAGATCTGTCCTCTGCTAAAAAATCCACAGTGCAGATTGGAGAAActgatTCTTTCAGACTGCAGTATTGGTGAAGAAGGTTATAaagctctggcttcagctctgagatcaaacccttcacacctgatagagctggatctcagaggaaatgatcctggacaatcaggaGTGAAGGAGCTCACTGACTTACTGCAGGATCCACACTGTACACTGAAGACACTGCGGTTTTTGAGTCCTGTTGCCAATGAAGCCTGTCAGTTTGTGATTGAAGTTGTGGGTGAAAACCCATTACTCCTGAAAGAGCTGAATCTGGGTGATCGTGAACTAGGAGACACACGAGTGAATCAACTCTCTGCTCTACTGCAGGACAAACACTGTACTGTCAATTCACTTATTCTGTCTGTTTGCAGTATTACAGAGGAACAGTGTGGGATCCTGACTTCGGCCCTGAAATCAAACCCATCACACCTAAGAGAACTGGACCTCAGTGTAAATCCGATTAGAAATGTGGGAGTGAATCTCTTATCTGACGTACTGAAGGAttcacactgtaaactggagacactgagGTTAAGCTGGTGTGAAATGACAGATGAAGGTTGTTCTGCTGTGACTTCAGCTCTGAACTCAAACCCATCACACCTGAGAGAACTAAACCTCAGTGGGAATAAACTAGGAGACTCTGGAGTGAAAAACCTCAGTGATTTACTGATGAAGCCACAACTCATGCTGGAGGAACTACGCCTGTGTGGATGCAGTATTACAGAGGAACAGTGTGAGATCCtgacttcagctctgaaatcaaACCCATCACACCTGAGAGAACTGAACCTCAGCtggaataatataaaaaacacaggCCTAAATCGCTTATGTGACATACTGAACGAAtcacactgtaaactggagacactgagATTGTTTGGCTGTGGCATCACTGATGTTTCTTCTTTAAGTCAGTGTTTGATGAATACAAAAGCTCTGCAGATTTTAAAAGATCTTGATCTGAGTTTCAATCCCATTGGAGACTCAAAGCAGGAGCTCATTGATGTGCTACAACAGTCAAACTGTAATCTGAG

Function

symbol description
si:ch211-250k18.5 Predicted to be involved in intracellular signal transduction.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000068749

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040160 True 3731 mRNA 0.43 12 9239831 9255288

Neighbor

gene id symbol gene type direction distance location
XLOC_020190 nlrp15 coding upstream 12949 9110998 ~ 9226882 (+)
XLOC_020188 si:ch211-213a13.2 coding upstream 143583 9060699 ~ 9096248 (+)
XLOC_020189 NA coding upstream 173413 9066086 ~ 9066418 (+)
XLOC_020187 si:ch211-213a13.2 coding upstream 182723 9009496 ~ 9057108 (+)
XLOC_020186 rnh1 coding upstream 230643 9003090 ~ 9009188 (+)
XLOC_020192 si:ch211-250k18.6 coding downstream 7512 9262800 ~ 9279332 (+)
XLOC_020193 si:ch211-250k18.7 coding downstream 31201 9286489 ~ 9315124 (+)
XLOC_020194 NA coding downstream 67469 9322757 ~ 9323817 (+)
XLOC_020195 NA coding downstream 86167 9341455 ~ 9343000 (+)
XLOC_020196 BX927329.2 coding downstream 96084 9351372 ~ 9359403 (+)
XLOC_020184 NA non-coding upstream 286279 8927365 ~ 8953552 (+)
XLOC_020183 NA non-coding upstream 345690 8886048 ~ 8894141 (+)
XLOC_020182 NA non-coding upstream 385297 8838425 ~ 8854534 (+)
XLOC_020181 NA non-coding upstream 402108 8821497 ~ 8837723 (+)
XLOC_020197 NA non-coding downstream 104611 9359899 ~ 9383484 (+)
XLOC_020205 NA non-coding downstream 527666 9782954 ~ 9791367 (+)

Expression


Co-expression Network