XLOC_020205


Basic Information

Item Value
gene id XLOC_020205
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9782954 ~ 9791367 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040181
cacacacatttcttgtCTGTATGGGGTTTGCAATGCAATAATGTtgagctttttttgttttcaaatgtaaCCTTTCTGAGATGTTAAAAAGGGGGATTTACACATGTGTCTGTTTTTACCTGTGGCTTTTAGAGGGTTTTATGTTGACACATCAGCAACTTCAGACAAACACTGTAGAGAACTTAATCACATCACCAGCAGtttttcgtGGAGATGAACCAAAGACAGTTTCAGTGACTGAGGGAGATTCTGTCACGCTAAACACTGGTGTTACTAAAATACAGAGCAATGATCAGATACTGTGGACATTTTGGCTTAAAAATACAGAGACTCGTATAGCTGAAATCTATAAagagagaaaatatatatatgagaatGAGATATTCAGACACAGACTACAGTTAGATGAGAAGTCTGGATCTCTGATCATCACAAACATCAACAAACTGCACTCTGGACTTTATAAACTAATGATCATCAGTGGAGGGGTCAAACACAGACATTTTAACATTGCTGATTATGCACCTCTAACTGTTCCTGTGATCAGCGATTCTCCTCCAAACCCTTCAGTATCAAAAAGATCCTTAAACCAGAACTGTTCGCTGgtgtgttcagtggtgaatgtgagtgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagtgtgtctgatctcagcatcagtctTTCTCTACCTCTGGAGATTGAGTGTCTGGATGACTCCTACAGCTGTGTTGTGGCTTACTCATTCACAAACCAGACTACACACCTCAACATTACTCAGCTATGCGGGACATGTTCAGCAACCAGACAACTCTTTATTCAGAAAGCTCTAATAATTACTGGTGTagtcctgttgttgttgttgttgctggtggTCACAGTTGGAGTTATGAAGTTCTGGCACAGGAGGAACAACAAACCAGCAATTGAAACTACAGAAGAAGAGGTCGTTTATACTGATGCAACATTTACTACACACAGAGCTCCAGATACTAAAACTAAGGGACTGGATCAGACCGAGTATTCAGAAGTGTTTCTGAGATGATGAGCAAGTCTGGTCATGGAGAGAATGCCCTGTTGTTTTCAGGAAGCAGCAGCATGTTGGAATGGATGAGGGTATACTGTAGCAAtgcaaaactgcagcaactgtcAGTATGGTTTCAGTATTCATGCTATACACACCAGTAAAGTCCACATTAACCAGAAGCTGCGActgtttttttcatattgtgaatCGATTCCTAGAGAAACGAAAAATTAAATGAGACGGTggatgtggcttgtttttttttctactgcgagctgaatgAATGTAAAGCCTTCCATACAGAAAGGTCAGTAAAAGGGTTTCAGATAAGTTATTACAATCCaacacacacacctcctcctCATTCTTTTTATTTGCTGTCAAAACTGAGAGTTGTAGGGGTGTAATTAAGTATGTTAACCATGTCCAATACTTCAAAATcatgtaatctgagaatttaactgaaaacaacacaggaagtgcattttcagatttagattttagattagaatggcaaacatttttttcttaaagacatgcgctgtcacaaaactggcaatgtgagctaacagaATCAATATGGttggtttttatttcatttgtttctgATTATTGGCATTGAGGGTTCCTCGAAGAACCTTTAACATGATAGAACCTTTTAATACTGCAgtagattaaaataaaaaggtaTAAGCAAGAACGAGCCAGGCGCTAATTCAGAGCCACTGCTATTGTCGGTTAGGAGCTGGTTGGTCTGGTGAACCTTGTAAGACGTGCTTTGCTTTTCCATCAGCTAAAGCCACCGTAGAGCCAGGTCAGACATCAGTAAATGTATCTTTCCCAGCAACACAAAGCAGAAGCACTGATACAAAACACGCTATCAGCAATCCATTGCTATAAATGTTTACAACTTTGTGAAACAATATCACTATCCAAACACAGTGAAACCAACGTGTTCATAAAGTGCCATAGTGTGTATAGAGAATGATGTCTTCCCTACAACAAACCGTTATTTGAATAGACTGAAACCATAATAAGTTCAACTGCTGCAATTTCAAATATTGCAATGGAAAGATTTCCTTTCGTCTTATTGGTCACAGTAGCCACACCCTTAGCCCCCAGCAAGTTGTTTTTTCCAGTGCCAAGATTCTTACTTCTTACTTTCAGACCAGCAATAATTTGCCcaagactaataataataattaacttacACTTAAGAAAAGCTTTTATGGTTTAGATTTGGTATTTTGGTGGTTAAAAGACAAATAATCATTTTGTTTCAAATTGCCTTGGTGAAAAAAGGGTCATTAATTAGAAACCTTTTTCATGTTATGAAAAGGTTCCCCAAAGAACATTAGAAGTTCTTTAAAAGAaccattttgctttgtttttattttgaggaataataaaataataagaaaatagaGTTTTCTAAAAAGAGTTTCATGGTGGAAGCCAAAATGaaaagggtctggctgcagactgggtgcacatgcaagctgagactgtaTGCAATGCTTTGAGCGTGTACACCTAACCCTGCCGCTAACCCTAACCCTCTAAGTGATATCACTATCTCTATTGAATGCATATGTCTAAAACTGCAAGTCTACAGCCAGATGCTATTGGAAAAAATAGTTTTACATGGcaccaatgc
>TCONS_00040182
TCTGGAGATTGAGTGTCTGGATGACTCCTACAGCTGTGTTGTGGCTTACTCATTCACAAACCAGACTACACACCTCAACATTACTCAGCTATGCGGGACATGTTCAGCAACCAGACAACTCTTTATTCAGAAAGCTCTAATAATTACTGGTGTagtcctgttgttgttgttgttgctggtggTCACAGTTGGAGTTATGAAGTTCTGGCACAGGAGGAACAACAAACCAGCAATTGAAACTACAGAAGAAGAGGTCGTTTATACTGATGCAACATTTACTACACACAGAGCTCCAGATACTAAAACTAAGGGACTGGATCAGACCGAGTATTCAGAAGTGTTTCTGAGATGATGAGCAAGTCTGGTCATGGAGAGAATGCCCTGTTGTTTTCAGGAAGCAGCAGCATGTTGGAATGGATGAGGGTATA

Function

GO:

id name namespace
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0034109 homotypic cell-cell adhesion biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000087999

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040181 False 2703 lncRNA 0.38 7 9782954 9791367
TCONS_00040182 True 428 processed_transcript 0.43 4 9787067 9789804

Neighbor

gene id symbol gene type direction distance location
XLOC_020204 BX664625.2 coding upstream 7320 9772754 ~ 9775634 (+)
XLOC_020203 BX664625.5 coding upstream 14404 9764731 ~ 9768550 (+)
XLOC_020202 BX664625.6 coding upstream 18983 9761930 ~ 9763971 (+)
XLOC_020201 BX664625.1 coding upstream 27843 9751117 ~ 9755111 (+)
XLOC_020200 strip1 coding upstream 244883 9522971 ~ 9538071 (+)
XLOC_020206 si:dkey-102c8.2 coding downstream 2556 9793923 ~ 9795657 (+)
XLOC_020207 si:ch211-236g6.1 coding downstream 15500 9806867 ~ 9808794 (+)
XLOC_020208 BX539307.1 coding downstream 62721 9854088 ~ 9855270 (+)
XLOC_020209 si:dkey-253d23.3 coding downstream 70876 9862243 ~ 9868707 (+)
XLOC_020210 si:dkey-253d23.4 coding downstream 79871 9871238 ~ 9880408 (+)
XLOC_020197 NA non-coding upstream 399470 9359899 ~ 9383484 (+)
XLOC_020196 BX927329.2 non-coding upstream 423551 9351372 ~ 9359403 (+)
XLOC_020195 NA non-coding upstream 439954 9341455 ~ 9343000 (+)
XLOC_020194 NA non-coding upstream 459137 9322757 ~ 9323817 (+)
XLOC_020189 NA non-coding upstream 716536 9066086 ~ 9066418 (+)
XLOC_020211 NA non-coding downstream 95378 9886745 ~ 9904498 (+)
XLOC_020212 NA non-coding downstream 106604 9897971 ~ 9904623 (+)
XLOC_020216 NA non-coding downstream 198538 9989905 ~ 9991494 (+)
XLOC_020219 NA non-coding downstream 227533 10018900 ~ 10049233 (+)
XLOC_020221 NA non-coding downstream 282053 10073420 ~ 10097227 (+)

Expression


Co-expression Network