XLOC_020207 (si:ch211-236g6.1)


Basic Information

Item Value
gene id XLOC_020207
gene name si:ch211-236g6.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9806867 ~ 9808794 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040184
GGTCTGATTTAGAAGCAAGCTCTTCGCAGCGCTATGAGGACCTATTAGATTAGAAGGTTTGAGAGAATTTTTAAGGGATATGCAGAGAGACGCTGCATTTCTCTATCTGTGCTTTCTGATTACAAACGGTATGTTTGGGGATGCAGATGAAATTAAGTCAGTGTTTGTGACTGAGGGAGACTCTGTCCCACTATACACTGATATTACTAAAGTGCAGGAAGGTGATCAGATCTACTGGAAATTTGGACATCAAAACACTCGAATAGCTGAAATCATCAAAAGGGACCAAATAGGTGTTAACATACATTTTTTGCTTAAGGATGGGAAATTCAAAAACAAACTACAACTGGACAATCacactggatctctgaccatcagaAATATCAGCACTGAACATGCTGGACTTTATGAACTGACTGTGATGAGTGGAAAAAACTCATTGACCAGATTTAATGTTACTGTCTATTCTCTACCTGTTCCTTTCATCAGCAATAACGCTTCAAACTGTTCTTCAAAATCATCAAGATCGCATTTTTCCAGATGTTCAGTGTTGTGTTCAGTGTTGAATTTGAGGGCTGcgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaaTATCAGGATAAAAACACCTACAGCTGCGTGGTCAATAACAACTTCACAAACCACACCACACATCTGGACATCAGTGATCTCTGTCACACATGTGCAGGTACGTCAGCTGTAATTAAACCACTGATATTTact
>TCONS_00040185
ATGCAGAGAGACGCTGCATTTCTCTATCTGTGCTTTCTGATTACAAACGGTATGTTTGGGGATGCAGATGAAATTAAGTCAGTGTTTGTGACTGAGGGAGACTCTGTCCCACTATACACTGATATTACTAAAGTGCAGGAAGGTGATCAGATCTACTGGAAATTTGGACATCAAAACACTCGAATAGCTGAAATCATCAAAAGGGACCAAATAGGTGTTAACATACATTTTTTGCTTAAGGATGGGAAATTCAAAAACAAACTACAACTGGACAATCacactggatctctgaccatcagaAATATCAGCACTGAACATGCTGGACTTTATGAACTGACTGTGATGAGTGGAAAAAACTCATTGACCAGATTTAATGTTACTGTCTATTCTCTACCTGTTCCTTTCATCAGCAATAACGCTTCAAACTGTTCTTCAAAATCATCAAGATCGCATTTTTCCAGATGTTCAGTGTTGTGTTCAGTGTTGAATTTGAGGGCTGcgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaaTATCAGGATAAAAACACCTACAGCTGCGTGGTCAATAACAACTTCACAAACCACACCACACATCTGGACATCAGTGATCTCTGTCACACATGTGCAGAACTGGAAAGAAATCACTATCTGATAGTTGTCACCGTGGTGCTGTTCGTAACAGTTTGGGGATTGATCTGGTGCTATAGGAAGCGTAAACAAGGACAATGTGGCAAGTGTTATTTTCTCCAAAATCTTTATTTGAacgtggaaaaaaaaatacatttaatctaA

Function

symbol description
si:ch211-236g6.1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CD84 (CD84 molecule).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-448 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CD84 (CD84 molecule).

Ensembl:

ensembl_id ENSDARG00000071590

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040184 False 802 mRNA 0.41 3 9806867 9808339
TCONS_00040185 True 852 mRNA 0.40 4 9806946 9808794

Neighbor

gene id symbol gene type direction distance location
XLOC_020206 si:dkey-102c8.2 coding upstream 11210 9793923 ~ 9795657 (+)
XLOC_020205 NA coding upstream 15500 9782954 ~ 9791367 (+)
XLOC_020204 BX664625.2 coding upstream 31233 9772754 ~ 9775634 (+)
XLOC_020203 BX664625.5 coding upstream 38317 9764731 ~ 9768550 (+)
XLOC_020202 BX664625.6 coding upstream 42896 9761930 ~ 9763971 (+)
XLOC_020208 BX539307.1 coding downstream 45294 9854088 ~ 9855270 (+)
XLOC_020209 si:dkey-253d23.3 coding downstream 53449 9862243 ~ 9868707 (+)
XLOC_020210 si:dkey-253d23.4 coding downstream 62444 9871238 ~ 9880408 (+)
XLOC_020211 NA coding downstream 77951 9886745 ~ 9904498 (+)
XLOC_020212 NA coding downstream 89177 9897971 ~ 9904623 (+)
XLOC_020197 NA non-coding upstream 423383 9359899 ~ 9383484 (+)
XLOC_020196 BX927329.2 non-coding upstream 447464 9351372 ~ 9359403 (+)
XLOC_020195 NA non-coding upstream 463867 9341455 ~ 9343000 (+)
XLOC_020194 NA non-coding upstream 483050 9322757 ~ 9323817 (+)
XLOC_020216 NA non-coding downstream 181111 9989905 ~ 9991494 (+)
XLOC_020219 NA non-coding downstream 210106 10018900 ~ 10049233 (+)
XLOC_020221 NA non-coding downstream 264626 10073420 ~ 10097227 (+)

Expression


Co-expression Network