XLOC_020212


Basic Information

Item Value
gene id XLOC_020212
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9897971 ~ 9904623 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042068
AATCAGCTCTGCACAACATCATAATACGTACAGGATCAAAACTCACTCACTGTGCTTGTGAATCTTTGCATGTATTTTCAGATATTGTAACCGCTTGAATCTTTTGTCACAGAGTGAACATTCATAAGGCGTTTCTGTAGTGTGAACTGACTGGTGATCTTTAAGGGCACTATCTGTATAGAAAGTCTTGCCACACTCAGAGCAAGCATGATCCTTCACACCGCTGTGCCTTTTCTGgtgtatttttaatgcagtttTATATCGATAACTCTTCCCACACAAATAACACACGTATGGCCTCTCATCCGTATGAACTTTTCGGTGGTCCCTCAGCATACTTGGCTTAAAAAAGCTTTTGTCGCACTGGTTACATTTATAGATTCTCTCTCTAGAATGACTCAGAAGATGACCTTTAAAAACATCGTATCTtctgaaacttttcccacactgatcACATTTGTGCAGATTCTCTCCGGTGTGGAGTTTTATGTGATTAGCAAGGCTGTCCCTTCTGGCAAACCTCGCCTCGCAATGATCACATGtgaacggcttctctccggtgtggatttTCAAGTGATTAGCAAGATTTAGTTTTGTGACAAAACCGatcccacactgatcacatgtgaacggcttctctccggtgtggattttcatgtgatAAGTAAGACTCCATTTTGTGGCAAAACCCGCCCCGCACTGATCACATTTGTGTGGCTTCTCTTTAGATTGTTTTTCAATGTGTACATCTAGATCTCTGTTTTGTCTCTTCCCATATGGATCACAGGAGtacggcttttctccagtgtgggtcttctcATGTCTTTTCAGAGTCTGCGGTAACTTAAATgccttgtcacagtgtgaacattTATGAGGTCTTTCTGTAGAGTGAgctttttcatgtatttttaaatacGCATTTATTAAAAAACTCTTGCCACACGTGGAGCAAACATGATCCTTCACACctttgtgtatgtttttgtgtttttttaacgcAGTTTTATTATTAAACCCCTTCCCACATTGATCACATAAGAAAGGGTTCTCTCCAAAGTGAGTTTGCATTTGCGCAGTAAAATCTCCTGTACTGTTGAAACCCTCTGCATACTGAGGATGAATGTACAGCATATTCCCAGAGTGGGTTTGCAAGTGACTGTTAAGGGTTTCCTTTCtgctgaaactcctcccacaatgaTCGCACgtgtacggcttctctccagtgtggattctcatgtggaTGTTTAAACTTTTTCTCTGTCTGAAAGTCTTCTCGCACTGATCACACTTGTGTGGCTTTTCTCCACTGTGGATCATCTCATGTATTCGTTGACACTGTAATGATTTGAACCCCTTGCCACAGTGTGAACATTTGAAAGGTTTTTCTGTAGCGTGAGCTGTGTGGTGGATTTTTAATTGACTATATGTAAAAAAGCTCTTGCCACACTTGGAGCAGACGTGATTCTTCACAGCGCTGTGTAATTTCCGGTGTTTTTTCAAAGTATTTGCATAAAGAAAACTCCTCCCACATAAATCACACATGAAGGGCTTCTCTCCGCTGTGAAATTTCATGTGTGCGGCTAAATTTCTCTTATCTGTGAAAGTCCTGTCACACTGATCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042068 True 1625 lncRNA 0.41 2 9897971 9904623

Neighbor

gene id symbol gene type direction distance location
XLOC_020210 si:dkey-253d23.4 coding upstream 17563 9871238 ~ 9880408 (+)
XLOC_020209 si:dkey-253d23.3 coding upstream 29264 9862243 ~ 9868707 (+)
XLOC_020208 BX539307.1 coding upstream 42701 9854088 ~ 9855270 (+)
XLOC_020207 si:ch211-236g6.1 coding upstream 89177 9806867 ~ 9808794 (+)
XLOC_020206 si:dkey-102c8.2 coding upstream 102314 9793923 ~ 9795657 (+)
XLOC_020213 blf coding downstream 12384 9917007 ~ 9923692 (+)
XLOC_020214 zgc:171686 coding downstream 35278 9939901 ~ 9945637 (+)
XLOC_020215 BX539307.2 coding downstream 76456 9981079 ~ 9984032 (+)
XLOC_020216 NA coding downstream 85282 9989905 ~ 9991494 (+)
XLOC_020217 BX324216.1 coding downstream 90210 9994833 ~ 10006999 (+)
XLOC_020205 NA non-coding upstream 106604 9782954 ~ 9791367 (+)
XLOC_020197 NA non-coding upstream 514487 9359899 ~ 9383484 (+)
XLOC_020196 BX927329.2 non-coding upstream 538568 9351372 ~ 9359403 (+)
XLOC_020195 NA non-coding upstream 554971 9341455 ~ 9343000 (+)
XLOC_020194 NA non-coding upstream 574154 9322757 ~ 9323817 (+)
XLOC_020219 NA non-coding downstream 114277 10018900 ~ 10049233 (+)
XLOC_020221 NA non-coding downstream 168797 10073420 ~ 10097227 (+)
XLOC_020223 NA non-coding downstream 253840 10158463 ~ 10164865 (+)
XLOC_020226 NA non-coding downstream 310371 10214994 ~ 10222660 (+)

Expression


Co-expression Network