XLOC_020193 (si:ch211-250k18.7)


Basic Information

Item Value
gene id XLOC_020193
gene name si:ch211-250k18.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9286489 ~ 9315124 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040162
TGTAAGATCAGGCTCAcatgtgtccagctctgtgtctgtAAAGAGTGACCGGTCAAAAGGTCACATGCCGGACTTCAGTGAGACAAAAACCTCACCAAATAAAAGGTTTCAATATAAGACATTAGAATTTGACTTCCAACCTCAAAGGAGCTGCAATAATTTCAAAGACCTCCAGTGCATCTTCCAGGGGCTTGAGAGCAAACTGTTCAACTTTCTGAAGAAAGAGTTGGAAAATTTTAAGAAAATCttacaaaaagaaaacacacaatacCTTGTAAAGGACTTTAATGAAAACAGATGCAGTATCAGAGAAGCAATACTTGATCTCACACTCTACTTCCTGAGAGAAATGAAGCAAGATGAAGCTGCTGATACTCTAGAAGATGAGCTGATCTTCATTCATCAGCTAAAATGTGGCCTACAGAAGAAGTATCagtgtgtgtttgaaggaattgcacagcaaggagactccacactccTGAAGAACATttacacagatctctatatcactcagggtggCAGTGAACAGGTCAATACTGAACATGAGGTCAGACAGATTGAAGTTGCTTCCAGACGTCATGAAGCTCaagagatacaggttgaatgcagacatttgtttgaagcatcTGAACAAGACAAGCAGATCAGAACTGTACTGACAAAAGGAGtcgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaaggaaaaaaaaatcgagagatcagcttcatatttcctcttccattcagagagatgaacttaaaggagaaagaaacaCTCAGTTTGATGGACcttataactcagtttttcccagagacaaaaggactgaaccttacaagaaggaatcgattcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagacgtgttgTGACGTTTCATCACCAgcctctctggatgttctcctgacgaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctccTGACTGTATCGagcggctgacagagatacgaggattcaatgatgcacaaaaggaggagtacttcagaaaaaGACTCACAGATGAGAATCAGGCCAAAGAAATCATTGATCATGTTAAACAATCAAAGAGTCTCTtcatcatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacatttTACAGGAGAAGAGAAATAATGGTGTGAAAAACAATCAGGCTGATGACGcctccaaaacactgcagaaatcaaacactgaagacactcccaagactctgacacagatgtacacacactttctgcgctttcagatccagcagagcagacgaaagtatgatggagaaaacacaccaGATGTTTCCTGGGATAAAGATgccatcctttcactggggaaactggcatTTCATCAGCTGCTAAACAGCAACCTGATCTTCTATGACACAGACCTGGAAGCCTGTGGTATTGACGTCTATAAGGCCTCAGtttactcaggcatgtgtacccagatctttaaggaggaaaCAGGGATTGTtgttggtaccatgtactgctttgtTCACTTGAGCGTTCAAGAGTTTATTGCAGCCCTTTATGCACATCTGATTCTAGACATCAACAAGAAAAGTGTGTTTGATCAAGACTCTAAAAACAGAAATGAGTCCATGATTGATTTGCTGAGGACTGCAGTGGACAAGACACTTGAGAGTGACAATGGACACCTGGACCTTTtccttcgcttccttctcggtctgtcactccagtccaatCGCCGACTCTTACAAGGTCTGTTGACACAGCAAGAACACAAtgaccagagcaaagaggaaatagTTCAGTACATCAAGCAGAAGTTTGAGGTGAATCattctccagagagatccatcaatctgttctactgtctgaatgaactgaacgaccaaactctggTGAAAGAGATTCAGACTCACCTTAGCAAAGGAAGTCTCTCATCTGCTGATCTTTCACCTGCCCAATGGTCTGCTTTGGCCTTCGTGTTGTTGACATCAGAGGAGGAgatggaggagtttgagcttcagaaattcaagaaatcagacgagtgtctcatcagactatcagcagtcatcaaaacctgcaaaagagctctgtTAAATGATTGTAACTTAACAGACAGAAGCTGTTCAACTGTGGCTGCGGTTCTCAGATCAGAAAACAGTCTGAAAGAGCTGAACATGAGCAAtaataatctgcaggattcaggagtgaagctgctctgTGCTGGACTGAAGAATATTAAGTGCGATTTAGAAACGCTGAGTCTTTCAGACTGCAGTATCAGTGAAGAAGGTTATAaagctctggcttcagctctgagatcaaacccttcacacctgatagagctggatctcagaggaaatgatcctggacaatcaggaGTGAAGGAGCTCACTGATTTACTGCAGGATCCACACTGTACACTAAAGACACTGAGGTTTTTGAGTGCTGCTGCTGATGAAGGCTGTCAGTTTGTGACTGGAATTGTGGGTAAAAACCCTTTACTTCTGAAAGAACTGAGTCTAAGTGGTCACGAACTAGGAGACACACGAGTGAATCAACTCTCTGCTCTACTGCAGGATAAACACTGTCAGATCAACACACTCATTCTGAGTCATTGCAGTATTACAGAGGAACAGTGTGTGATCCtgacttcagctctgaaatcaaACTTGTCACACCTGAGAGAACTGAACCTCAGTGGGAATCAAATAAGAAAATCAGGACTGAATCTCTTATGTGACGTACTGAAAGAttcacactgtaaactggagacactgagGTTAAATGATTGTAAGTTAACAGACAGAAGCTGTTCAACTCTGGCTGCAGTTCTCAGATCAGAAAACAATCTGAAAGAGCTGAACATGAGCTATAAcaatctgcaggattcaggagtgaagctgctctgTGCTGGACTGAAGAACATTCAGTGCAAGTTAGAAATACTGAGTCTTTCAGACTGCAGTATCAGTGAAGAAGGTTATAaagctctggcttcagctctgagatcaaacccttcacacctgatagagctggatctcagaggaaatgatcctggacaatcaggaGTGAAGGAGCTCACTGAGATACTGCAGGATCCACACTGTACACTGAACACACTGAGGTTTTTGAGTCCTGCTGCTGATGAATTCTGTCAGTTTGTGACTGGAGTTGTGGATATAAACCCGTTACTCCTGAAAGAACTGAATCTGAGTGATCAAGAATTAGGAGACACACGAGTGAATCAACTCTCTGCTCTACTGCAGGACGAACACTGTCAGATCAACACACTCATTCTGTGGAGATGCAGTATTACAGAGAAACAGTGTGTGATCCtgacttcagctctgaaatcaaACCCATCACACCTGAGAGAACTGAACCTCAGTCTGAATAATCTAGGAGACTCTGGAGTGAAAAACCTCAGTGATTTACTGATGGAGACACAGTTCAAGCTGGAGATACTAGATCTGTGGGATTGCAGTATTACAGAGAAACAGTGTGACATCCtgacttcagctctgaaatcaaACCCATCTCACCTGAGAGAACTGAGCCTCATCTGGAATAAACTAGGAGACTCTGGAGTGAAAAACCTCAGTGATTTACTGATGAAGCCACAATTCAAGCTGGAGAAACTAAATCTGTGTGAATGCAGTATTACAGAGGAACAATGTGTGATCCTGGCTTCAGCTCTGAAATCAAACCCATCACACCTGAGAGAACTGAACCTCAGTGAGAATCAAATAAGAAACACAGGAGTGAGTCTCTTATGTGATGTACTGAAGGAttcacactgtaaactggagacactgagATTGTTTGGCTGTGGCATCACAGATGTTTCTTCTTTAACTCAGTGTTTAATGAGCACTAAAGCTCTGCAGTTTCTAAAAGAGCTTGATCTGAGTTTTAATCACATTGGAGACTCAAAGCAGAAGCTCATTGATGTGATGCGAGACTCAAACTGTAAACTGATAATAGAGAATTAGTTGCCGAACCCTGAAGACTCTGGATGCTGTATATCATAGTCAGCTGTAAAGATGTGAGAATCAGTGAACATCAGTTGAGGATCCACAGAAGAGTCTCAATACTGTGGTAAAATGTGGGATTAAAATGTAAAGATAAATGTTAAATCAGGTGAAGAGACTCAGAATGACAAGCAAATAATGCAGCGTGTGTTAAAAACATGATATTGAATCAGAAAATATTTTCATGTGGAATCAAACATTCATTATGCAATTAAATGTTTCTAATTATTTGTGTCATTTTAAGTGCAGCTCTTAAATGTTTCAACAGTAAAACTGAAACgagaacattttgttttaaaaaaggtGCATAACCACTCTTACATTTCATACATAGCAGATCTTTATTACtgtattatagtttattttatattatcctGGCTCTATATGTCTGTTGCTGatgctattatttaaaaaaaaaaaggtaattattcacactcaattgcttcgtactgtttttatttttcttacgtTATACGGGTGAATAAAAGACAGATGTTTCTGCACAAAGCCTTCATCAGTGCGACTCTGTTGCTGATGCACAAATATTC
>TCONS_00040163
ATGAAGCAAGATGAAGCTGCTGATACTCTAGAAGATGAGCTGATCTTCATTCATCAGCTAAAATGTGGCCTACAGAAGAAGTATCagtgtgtgtttgaaggaattgcacagcaaggagactccacactccTGAAGAACATttacacagatctctatatcactcagggtggCAGTGAACAGGTCAATACTGAACATGAGGTCAGACAGATTGAAGTTGCTTCCAGACGTCATGAAGCTCaagagatacaggttgaatgcagacatttgtttgaagcatcTGAACAAGACAAGCAGATCAGAACTGTACTGACAAAAGGAGtcgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaaggaaaaaaaaatcgagagatcagcttcatatttcctcttccattcagagagatgaacttaaaggagaaagaaacaCTCAGTTTGATGGACcttataactcagtttttcccagagacaaaaggactgaaccttacaagaaggaatcgattcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagacgtgttgTGACGTTTCATCACCAgcctctctggatgttctcctgacgaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctccTGACTGTATCGagcggctgacagagatacgaggattcaatgatgcacaaaaggaggagtacttcagaaaaaGACTCACAGATGAGAATCAGGCCAAAGAAATCATTGATCATGTTAAACAATCAAAGAGTCTCTtcatcatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacatttTACAGGAGAAGAGAAATAATGGTGTGAAAAACAATCAGGCTGATGACGcctccaaaacactgcagaaatcaaacactgaagacactcccaagactctgacacagatgtacacacactttctgcgctttcagatccagcagagcagacgaaagtatgatggagaaaacacaccaGATGTTTCCTGGGATAAAGATgccatcctttcactggggaaactggcatTTCATCAGCTGCTAAACAGCAACCTGATCTTCTATGACACAGACCTGGAAGCCTGTGGTATTGACGTCTATAAGGCCTCAGtttactcaggcatgtgtacccagatctttaaggaggaaaCAGGGATTGTtgttggtaccatgtactgctttgtTCACTTGAGCGTTCAAGAGTTTATTGCAGCCCTTTATGCACATCTGATTCTAGACATCAACAAGAAAAGTGTGTTTGATCAAGACTCTAAAAACAGAAATGAGTCCATGATTGATTTGCTGAGGACTGCAGTGGACAAGACACTTGAGAGTGACAATGGACACCTGGACCTTTtccttcgcttccttctcggtctgtcactccagtccaatCGCCGACTCTTACAAGGTCTGTTGACACAGCAAGAACACAAtgaccagagcaaagaggaaatagTTCAGTACATCAAGCAGAAGTTTGAGGTGAATCattctccagagagatccatcaatctgttctactgtctgaatgaactgaacgaccaaactctggTGAAAGAGATTCAGACTCACCTTAGCAAAGGAAGTCTCTCATCTGCTGATCTTTCACCTGCCCAATGGTCTGCTTTGGCCTTCGTGTTGTTGACATCAGAGGAGGAgatggaggagtttgagcttcagaaattcaagaaatcagacgagtgtctcatcagactatcagcagtcatcaaaacctgcaaaagagctctgtaa
>TCONS_00040164
ATGAGCTATAAcaatctgcaggattcaggagtgaagctgctctgTGCTGGACTGAAGAACATTCAGTGCAAGTTAGAAATACTGAGTCTTTCAGACTGCAGTATCAGTGAAGAAGGTTATAaagctctggcttcagctctgagatcaaacccttcacacctgatagagctggatctcagaggaaatgatcctggacaatcaggaGTGAAGGAGCTCACTGAGATACTGCAGGATCCACACTGTACACTGAACACACTGAGGTTTTTGAGTCCTGCTGCTGATGAATTCTGTCAGTTTGTGACTGGAGTTGTGGATATAAACCCGTTACTCCTGAAAGAACTGAATCTGAGTGATCAAGAATTAGGAGACACACGAGTGAATCAACTCTCTGCTCTACTGCAGGACGAACACTGTCAGATCAACACACTCATTCTGTGGAGATGCAGTATTACAGAGAAACAGTGTGTGATCCtgacttcagctctgaaatcaaACCCATCACACCTGAGAGAACTGAACCTCAGTCTGAATAATCTAGGAGACTCTGGAGTGAAAAACCTCAGTGATTTACTGATGGAGACACAGTTCAAGCTGGAGATACTAGAGTTAGTATCATTATAA

Function

symbol description
si:ch211-250k18.7 Predicted to be involved in intracellular signal transduction.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-246 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDARG00000093761

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040162 False 4695 mRNA 0.41 16 9286489 9315124
TCONS_00040163 False 1860 mRNA 0.44 2 9287929 9289868
TCONS_00040164 True 621 mRNA 0.43 4 9294336 9305780

Neighbor

gene id symbol gene type direction distance location
XLOC_020192 si:ch211-250k18.6 coding upstream 7157 9262800 ~ 9279332 (+)
XLOC_020191 si:ch211-250k18.5 coding upstream 31201 9239831 ~ 9255288 (+)
XLOC_020190 nlrp15 coding upstream 59607 9110998 ~ 9226882 (+)
XLOC_020188 si:ch211-213a13.2 coding upstream 190241 9060699 ~ 9096248 (+)
XLOC_020189 NA coding upstream 220071 9066086 ~ 9066418 (+)
XLOC_020194 NA coding downstream 7633 9322757 ~ 9323817 (+)
XLOC_020195 NA coding downstream 26331 9341455 ~ 9343000 (+)
XLOC_020196 BX927329.2 coding downstream 36248 9351372 ~ 9359403 (+)
XLOC_020197 NA coding downstream 44775 9359899 ~ 9383484 (+)
XLOC_020198 si:ch211-11p18.6 coding downstream 74677 9389801 ~ 9459026 (+)
XLOC_020184 NA non-coding upstream 332937 8927365 ~ 8953552 (+)
XLOC_020183 NA non-coding upstream 392348 8886048 ~ 8894141 (+)
XLOC_020182 NA non-coding upstream 431955 8838425 ~ 8854534 (+)
XLOC_020181 NA non-coding upstream 448766 8821497 ~ 8837723 (+)
XLOC_020205 NA non-coding downstream 467830 9782954 ~ 9791367 (+)

Expression


Co-expression Network