XLOC_020398 (nfil3-4)


Basic Information

Item Value
gene id XLOC_020398
gene name nfil3-4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 20560041 ~ 20560787 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040485
ATGGAGTCTGCTTTCTCACAAATGAGGTGGGACCATGAGGGAGAGTCTGAAGAAATGTCTCTGCGTGCTTTGGGATTGCGCCGCAAACGGGAATTCATTCCCGAGGACAAGAAAGATGCCATGTACTGGGAGAAACGCCGCAAGAACAATGAAGCGGCAAAGCGCTCGAGGGAGAAACGAAGGGTCAGTGACTACATGTTAGAGACTCGATTGGTTTCTCTGAGTGAGGAAAATGCTCGTCTACGAGCCGAGCTGTTGGCACTGAGGCTTCGGTGTGGAATGCTCAACCCTGGAACCCCCTACTCTTCATCTCAAAGCGCTCTATCTCAGCTTCACGCCTTGGCGCCACAACCTCTGGTTTCCTGCCCAGATAAAGACCTCTCTTGGGGTAGAAGACAAGACAGAGAGACTTCCAATCTGTCAGGGATCCAAAAGTCACCCATCTGTCTAGGTACTCATCCAGGATCAGCATTCCTGCCCACACACCCAATGGCCATAAGAAGAAATCACCCCTATTTACTAGAATTCCCAAGTGTCCATTCTCCTACAGCCACACCTTTACTCTTTCCTCCGCAACTCAGCCCACCAACCACCACATGGGCAGGACGACCCTTGCTTCAGCCTGGGAATCACAGGATCTTGTCAGATGAGGAGGGTGAGCAGCAGGTACCAGCAGATTCCAGTTCTGCACTGCCCCACAAACTGAGACTGAAGACGCAAACCTCACAGTTCAAGGACAATGGAGCC

Function

symbol description
nfil3-4 Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in circadian rhythm and regulation of transcription, DNA-templated. Predicted to act upstream of or within immune response and transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0006955 immune response biological_process
GO:0007623 circadian rhythm biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-214 Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in circadian rhythm and regulation of transcription, DNA-templated. Predicted to act upstream of or within immune response and transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000092346

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040485 True 747 mRNA 0.52 1 20560041 20560787

Neighbor

gene id symbol gene type direction distance location
XLOC_020397 si:dkey-172o19.2 coding upstream 12634 20546612 ~ 20547407 (+)
XLOC_020396 onecut3a coding upstream 86474 20461488 ~ 20473567 (+)
XLOC_020395 NA coding upstream 126024 20433570 ~ 20434017 (+)
XLOC_020394 foxq2 coding upstream 130667 20427170 ~ 20429374 (+)
XLOC_020393 NA coding upstream 227207 20312803 ~ 20332834 (+)
XLOC_020399 NA coding downstream 11047 20571834 ~ 20573960 (+)
XLOC_020400 peak3 coding downstream 149647 20710434 ~ 20712654 (+)
XLOC_020401 si:dkey-211f22.5 coding downstream 160021 20720808 ~ 20747062 (+)
XLOC_020402 CU693455.2 coding downstream 533064 21093851 ~ 21093965 (+)
XLOC_020403 NA coding downstream 573922 21134709 ~ 21141119 (+)
XLOC_020392 NA non-coding upstream 294514 20261231 ~ 20265527 (+)
XLOC_020391 NA non-coding upstream 300694 20247909 ~ 20259347 (+)
XLOC_020390 NA non-coding upstream 312565 20246472 ~ 20247476 (+)
XLOC_020412 NA non-coding downstream 1108378 21669165 ~ 21766839 (+)
XLOC_020413 NA non-coding downstream 1225992 21786779 ~ 21787648 (+)

Expression


Co-expression Network