XLOC_020396 (onecut3a)


Basic Information

Item Value
gene id XLOC_020396
gene name onecut3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 20461488 ~ 20473567 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040483
TTTCAACAATGGAACTTACAATGGAAAACATTGGGAATTTGCACGGCGTCTCACACTCCCATCAAACGGGAGACTTGATGAACTCTCCTCACGCGCGACAGTCGGCGACACATAGGAACTTGGTATCATCGCACGGGAGGTCAGCGATGGTGTCCAGCATGGCCTCGATACTGGACGGGGCCGGGGAGTATCGCACGGACCATTCGTTGTCCGGTCCTCTCCATCCAGCGATGACCATGTCGTGCGATTCGAGCATGAGTCTGAGCAGCACTTACACCACCCTGACGCCGTTGCAGCACCATTTGCCTCCCATATCCAACGTCTCAGATAAATTTCACCATCATCCGCACCCTCACGCTCATCACCACCCCGCGCACCAGCGTCTCGCAGCCGGGAACGTCAGCGGCAGCTTTACGCTGATGCGTGATGACCGGGGCCTCGCGTCTATGAGCAACCTATACGGCCACTACTCCAAAGATTTGTCCGGGATGGGACCACCTTTGTCACCTCTTTCCAACGGCCTTGGGTCTTTGCACAACTCTCAACAAACTCTAAGTGCGTACGGTCCGAGTGCTCACCTGGGGAATGACAAGATGATTTCCTCGGGGGGCTTCGAGTCCCATGCTGCGATGCTCGGACGGGGCGAGGAGCACCTGGCGCGGGGTTTAGGGGGACATGGAGCGGGTATCATGTCTTCTCTCAACGGCATcaatcaccaccaccaccacagtCACTCGCACTCTCAGGCGAATGGTTCGGTGCTCTCGGAGCGGGACAGGCAGGCAGGAGCCGGCGGACAGGGTGGTGGGTCGGGTCAAGTAGAGGAGATCAACACCAAAGAGGTGGCTCAGCGAATAACGGCGGAGTTAAAGAGGTACAGCATTCCACAGGCCATCTTTGCCCAAAGGATCTTGTGTCGCTCTCAAGGAACTCTGTCGGATCTCCTGCGGAATCCAAAACCCTGGAGTAAACTCAAGTCAGGTCGGGAGACGTTCAGACGGATGTGGAAGTGGCTACAAGAACCAGAGTTCCAGCGCATGTCGGCCCTTAGGCTCGCAGCCTGCAAGCGAAAGGAACAGGAGCAGCACAAGGAACGCAATATGGCGCCCAAGAAACAGCGTTTGGTCTTCACCGACCTCCAGCGTCGCACACTCATCGCCATTTTCAAGGAGAACAAGCGGCCCTCGAAGGAAATGCAGCTGACTATCTCACAGCAGCTCGGCCTGGAACTCAGCACCGTCAGCAACTTCTTCATGAATGCACGTCGGCGATGTGTTGACCGCTGGCATGAGGAACACCATCACGGCCATGTAGCCAGTCCTGGCCAGCCAGGCACCTC

Function

symbol description
onecut3a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within liver development. Predicted to be active in nucleus. Is expressed in intestine and liver. Orthologous to human ONECUT3 (one cut homeobox 3).

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0001889 liver development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-744 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within liver development. Predicted to be active in nucleus. Is expressed in intestine and liver. Orthologous to human ONECUT3 (one cut homeobox 3).

Ensembl:

ensembl_id ENSDARG00000056395

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040483 True 1339 mRNA 0.57 2 20461488 20473567

Neighbor

gene id symbol gene type direction distance location
XLOC_020395 NA coding upstream 27471 20433570 ~ 20434017 (+)
XLOC_020394 foxq2 coding upstream 32114 20427170 ~ 20429374 (+)
XLOC_020393 NA coding upstream 128654 20312803 ~ 20332834 (+)
XLOC_020392 NA coding upstream 195961 20261231 ~ 20265527 (+)
XLOC_020391 NA coding upstream 202141 20247909 ~ 20259347 (+)
XLOC_020397 si:dkey-172o19.2 coding downstream 73045 20546612 ~ 20547407 (+)
XLOC_020398 nfil3-4 coding downstream 86474 20560041 ~ 20560787 (+)
XLOC_020399 NA coding downstream 98267 20571834 ~ 20573960 (+)
XLOC_020400 peak3 coding downstream 236867 20710434 ~ 20712654 (+)
XLOC_020401 si:dkey-211f22.5 coding downstream 247241 20720808 ~ 20747062 (+)
XLOC_020390 NA non-coding upstream 214012 20246472 ~ 20247476 (+)
XLOC_020402 CU693455.2 non-coding downstream 620284 21093851 ~ 21093965 (+)
XLOC_020403 NA non-coding downstream 661142 21134709 ~ 21141119 (+)
XLOC_020412 NA non-coding downstream 1195598 21669165 ~ 21766839 (+)
XLOC_020413 NA non-coding downstream 1313212 21786779 ~ 21787648 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_03765594_03778884 ONECUT3, ONECUT3A coding CI01000030 null 3765062 ~ 3779032 (+)