CI01000030_03765594_03778884 (ONECUT3, ONECUT3A)


Basic Information

Item Value
gene id CI01000030_03765594_03778884
gene name ONECUT3, ONECUT3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3765062 ~ 3779032 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000030_03765594_03778884.mRNA
CTTTAAAAGGCTTTTGCGCCTTGATTAAGTTTCACAAAGATATTTTTATTCTCTATAGTTCTTTAGAAAACACATGTATTGCCTACTGGTGTTTTAAACAAATCAGAAACCAATAGGCTGAAGAACCTGAATAATGAAACCAACAAAATTAACTCAAGATCCCTAAATAACAAAAATTGGTTCTGGATAGGAAAAAAAAGGCGTTTTGCTGAATCTAAGAATCACCGAAGAACCTTTATTTTGTGGGGCGCGCGCGCCAGTGCACACATCTTAATATATTGCGCGGTCACGAGACAGACACTCTCACTCGGTCAGCTTCGACTGTCAGTAGTAAGACGCGCGCCACGGCGATAGATACAAGCGTTTAGACACCAGGCGTACGTACATGTGCGTGGTGAAATGCTGGATTGACTAACACTGAAGATCTCGGGGATCAATGGCGCGCGGCTTTGAGATCGTTTAAAATTTATTGGAAGGGAGAGTGTGAGAAAAAAAGGAAAGAGAGAGAGGGGCAAAACAGTGTCTTTCAACAATGGAACTTACAATGGAAAACATTGGGAATCTGCACGGCGTGTCACACTCCCATCAAACGGGGGACTTGATGAACTCTCCTCACGCGCGGCAGTCGACGACACATAGGAACTTGGTGTCATCGCACGGGAGGTCAGCGATGGTGTCCAGCATGGCCTCAATACTGGACGGGGCCGGGGAGTATCGCACGGACCATTCGCTGTCCGGTCCTCTCCATCCAGCGATGACCATGTCGTGCGATTCAAGCATGAGTCTGAGCAGCACTTACACCACCCTGACGCCGCTGCAGCACCATTTGCCTCCCATATCCAACGTCTCAGAGAAATTTCACCATCACCCGCACCCTCACGCTCATCACCATCCCGCGCACCAGCGTCTCGCCGCCGGGAATGTCAGCGGCAGCTTCACGCTGATGCGGGATGACCGGGGCCTCGCGTCCATGGGCAATCTATACGGCCACTATTCCAAAGACTTGTCCGGGATGGGACAACCTTTATCGCCTCTTTCCAATGGCCTTGGGTCTTTGCACAACTCTCAACAGACTCTGAGCGCGTACGGTCCGAGTGCTCACCTGGGGAACGACAAGATGATTTCCACGGGAAGCTTCGAGTCCCACGCTGCGATGCTCGGCCGGGGCGAGGAGCACCTGGCGCGGGGTTTAGGCGGGCATGGGGCGGGCATAATGTCTTCTCTCAACGGCATCAACCACCACCACCACAGTCACTCGCACTCTCAGGCGAACGTGTCGGTGCTCTCGGAGCGGGATAGGCAGGCAGCAGGAGGCGGCGGACAGGGCGGTGGGTCAGGGCAGGTGGAGGAGATCAACACCAAGGAGGTGGCTCAGCGAATAACGGCGGAGTTAAAGAGGTACAGCATTCCACAGGCCATCTTTGCCCAGAGGATCTTGTGTCGCTCTCAAGGAACTCTCTCGGACCTCCTGCGGAATCCCAAACCCTGGAGTAAACTCAAGTCAGGTCGGGAGACGTTCAGACGGATGTGGAAGTGGCTGCAGGAACCCGAGTTCCAGCGCATGTCAGCCCTTAGGCTTGCAGCCTGCAAGCGTAAGGAACAAGAGCAGCACAAGGAACGCAATATGGCACCCAAGAAGCAGCGCTTGGTCTTCACCGATCTGCAGCGTCGCACGCTCATCGCCATTTTCAAGGAGAACAAGCGGCCCTCGAAGGAAATGCAGCTGACCATCTCGCAGCAGCTAGGCCTGGAACTCAGCACCGTCAGCAACTTCTTCATGAACGCGCGTCGCCGCTGCGTCGACCGCTGGCATGAGGAACACCATCACGGCCATGTAGCCAGCCCCGGCCAGCCAGGCACCTCCGCCACCACCTTCTCCAAGGCTTAAATCTTAAACCACTTTTTCCCATGGGCGGCTGAGACTGGATTTTCATTCCTCACATAGTCACCCGTTGCGTGCCAATCAATCCCACTGCTGCCAAAAAAAATGGCAAATTTTCACGTAAATGCAACCTTTTACTTCTTTGGGACTGTTA

Function

symbol description
onecut3a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within liver development. Predicted to be active in nucleus. Is expressed in intestine and liver. Orthologous to human ONECUT3 (one cut homeobox 3).
onecut3 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K08026 ONECUT1, HNF6; one cut domain, family member 1 (hepatocyte nuclear factor 6)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000030_03765594_03778884.mRNA True 2036 mRNA 0.53 2 3765062 3779032

Neighbor

gene id symbol gene type direction distance location
CI01000030_03744173_03745628 FOXQ2 coding upstream 19321 3743491 ~ 3745741 (+)
CI01000030_03715463_03716370 NA coding upstream 47493 3714611 ~ 3717569 (+)
CI01000030_03703231_03704355 NA coding upstream 60447 3701601 ~ 3704615 (+)
CI01000030_03594936_03629403 UNC13A coding upstream 135577 3594936 ~ 3629485 (+)
CI01000030_03580764_03584676 HMG20B coding upstream 179807 3580764 ~ 3585255 (+)
CI01000030_03825765_03826754 NA coding downstream 46383 3825415 ~ 3826794 (+)
CI01000030_03838027_03838812 NA coding downstream 57296 3836328 ~ 3840945 (+)
CI01000030_03909138_03910046 NA coding downstream 130006 3909038 ~ 3910046 (+)
CI01000030_03915675_03916993 NA coding downstream 136254 3915286 ~ 3916993 (+)
CI01000030_03917423_03918481 NA coding downstream 138391 3917423 ~ 3918674 (+)
G159483 NA non-coding upstream 1779 3763048 ~ 3763283 (+)
G159465 NA non-coding upstream 69773 3694956 ~ 3695289 (+)
G159464 NA non-coding upstream 70167 3694655 ~ 3694895 (+)
G159545 NA non-coding downstream 30392 3809424 ~ 3809647 (+)
G159546 NA non-coding downstream 30906 3809938 ~ 3810239 (+)
G159547 NA non-coding downstream 31701 3810733 ~ 3811214 (+)
G159548 NA non-coding downstream 32700 3811732 ~ 3811980 (+)
G159552 NA non-coding downstream 37730 3816762 ~ 3816999 (+)
CI01000030_03018776_03042194 FGF22 other upstream 721289 3018776 ~ 3043773 (+)
G158416 NA other upstream 1150769 2595876 ~ 2614293 (+)
CI01000030_02277208_02282376 TM6SF2 other upstream 1482692 2277208 ~ 2282743 (+)
G157726 NA other upstream 2126835 1636867 ~ 1638227 (+)
CI01000030_01003310_01003776 NA other upstream 2758375 1003114 ~ 1003795 (+)
G159685 NA other downstream 652768 4431800 ~ 4488526 (+)
G159816 NA other downstream 737746 4516778 ~ 4517381 (+)
CI01000030_07200104_07202258 GCGA other downstream 3420903 7200104 ~ 7202485 (+)
CI01000030_07868597_07886123 NA other downstream 4075053 7868292 ~ 7886228 (+)
G162088 NA other downstream 4458933 8237965 ~ 8239604 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020396 onecut3a coding NC_007133.7 CM002906.2 20461488 ~ 20473567 (+)