XLOC_002051 (lrrtm4l1)


Basic Information

Item Value
gene id XLOC_002051
gene name lrrtm4l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 19310688 ~ 19394491 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003972
AGTTGCTTGCTGCGTAGCGAGAATCCATTCATATTCCGTTTGTTTGAACGACGGATGCCCATCATGGTAATTGCTGTTGGATTTATACCGGTTTGCTGTGATGTTGGATTAAGCAGAGGAGGCAACGCGTTTTAAAGTGTTTTGCGATATGGAGTCGGATCGATAATGATTTTAGTTGGGCTGTAATACTGCTCGGACTAAAGGTAAAAAGTGTCCGTTTGAGTGGATCCTGAGAGACTGAATATCTGTGCATTGACCGCAGGGATAAAACGCGAGTGGAATCAAAAGCGCGCGGCTGATATGGGTTCTCTTGCGTGTGACATGAGATTAGCAGGCCTCCTCCTGCTTCAAGCCTCCTCCCTCCTGCTGTTCAGTTCTGGGGAACGAATGTGCCCCTATAGCTGTCATTGTGAGGGAAAGATTGTCCACTGTGAGTCGTCTGCCTTCCAGGACGTCCCAGAAAATATTTCAGTTAGTTGCCAAGGTCTGTCTCTGCGCTACAATGACCTGCACACAATGCTCCCTTACCAGTTTGCCCATCTCAACCAGTTGCTTTGGCTTTACCTGGACCACAATCAAATCATGTTCGTTGATAGTCGTGCTTTCCAGGGGGTGCGGCGATTGAAGGAGTTGATCTTGAGCTCGAACAGGATTTCACAGCTCCACAATGTCACATTCCATGGAGTACCTAACCTTCGTAGTCTCGATCTGTCCTATAACAAGTTGCAGGAGTTGCAGCCTGGCCAGTTTTATGGTCTTCGAAAACTGCAAAATCTGCACTTGCGTTCAAATGGGCTTACGGCAATCCCTGTCCGTGCGTTTTTGGAGTGCCGAAGCTTGGAGTTTCTAGACTTGGGCTATAATCGGCTTCGGGTTCTAACTCGCACAGCATTCCTAGGTTTGTCTCGACTTATGGAACTCCACCTGGAACACAATCAGTTTTCACGAATCAACTTCTTTCTCTTTCCACGCCTTGCCAACCTTCGAGCCCTTTACCTACAGTGGAACCGTATTCGAGCTGTCAACCAAGGCCTTCCGTGGAGCTGGTATACCCTGCAGAGGCTTGACATCTCTGGCAATGAGATACAGGTACTAGATCCTGTAGTCTTTCAATGCCTTCCCAATCTTCAGGTTCTCAACTTGGAGTCTAACAAACTCGCCAATGTCTCTCAGGAAGTTGTGGCTGCCTGGATCTCACTAACAACTATTAGCCTTGCAGGCAATATGTGGGATTGTGGTCCGGGTATTTGTCCTCTTGTTGTCTGGCTCAAGAATTTCAGAGGCACCAAGGACACTAATATAATCTGCAGCAGTCCCAAACACCTTCAAGGGGAAAAAGTCATTGAGGCTTCAAAGAACTACATTGACTGTGATGATTATGAAATTACCGCTCAATCTCCTTTGTATCTGCAGACGTTTGATCCAAATTATGACCTTGCTCTTGAACCAACTGAACCAACAATGGCTCCTACCACACCGCCACCACCCCTGCCATCCCCCGCCTCAGAGGCACCTTTTCCTCCTCCCCAGCCTCGCCCACCTCATCGCCCCACCTTTCCCAGTCGTACAAACACAGATCCCAGAGACTCTCATCAACGGACACCTTCATCTTTTGACAGCTCATTAGTGACACCAGTTCCTGAGCAAGACAACGTGTCATTTCACAAA
>TCONS_00003973
TGTCAAAATAATTAATGACCACAAAAATACTGTAGGTGCACACAAACCATTGTAGATGTTGTTAGAAGAAAAATGTTATCAAATTTACCTTGATAAAACAGTATTTGGCTATAAAAAATGTGTCTTTATATTAAACATGATAAGCTGACATTGTATTCTTTTCTTACTGCAGGTTCTCTTGCGTGTGACATGAGATTAGCAGGCCTCCTCCTGCTTCAAGCCTCCTCCCTCCTGCTGTTCAGTTCTGGGGAACGAATGTGCCCCTATAGCTGTCATTGTGAGGGAAAGATTGTCCACTGTGAGTCGTCTGCCTTCCAGGACGTCCCAGAAAATATTTCAGTTAGTTGCCAAGGTCTGTCTCTGCGCTACAATGACCTGCACACAATGCTCCCTTACCAGTTTGCCCATCTCAACCAGTTGCTTTGGCTTTACCTGGACCACAATCAAATCATGTTCGTTGATAGTCGTGCTTTCCAGGGGGTGCGGCGATTGAAGGAGTTGATCTTGAGCTCGAACAGGATTTCACAGCTCCACAATGTCACATTCCATGGAGTACCTAACCTTCGTAGTCTCGATCTGTCCTATAACAAGTTGCAGGAGTTGCAGCCTGGCCAGTTTTATGGTCTTCGAAAACTGCAAAATCTGCACTTGCGTTCAAATGGGCTTACGGCAATCCCTGTCCGTGCGTTTTTGGAGTGCCGAAGCTTGGAGTTTCTAGACTTGGGCTATAATCGGCTTCGGGTTCTAACTCGCACAGCATTCCTAGGTTTGTCTCGACTTATGGAACTCCACCTGGAACACAATCAGTTTTCACGAATCAACTTCTTTCTCTTTCCACGCCTTGCCAACCTTCGAGCCCTTTACCTACAGTGGAACCGTATTCGAGCTGTCAACCAAGGCCTTCCGTGGAGCTGGTATACCCTGCAGAGGCTTGACATCTCTGGCAATGAGATACAGGTACTAGATCCTGTAGTCTTTCAATGCCTTCCCAATCTTCAGGTTCTCAACTTGGAGTCTAACAAACTCGCCAATGTCTCTCAGGAAGTTGTGGCTGCCTGGATCTCACTAACAACTATTAGCCTTGCAGGCAATATGTGGGATTGTGGTCCGGGTATTTGTCCTCTTGTTGTCTGGCTCAAGAATTTCAGAGGCACCAAGGACACTAATATAATCTGCAGCAGTCCCAAACACCTTCAAGGGGAAAAAGTCATTGAGGCTTCAAAGAACTACATTGACTGTGATGATTATGAAATTACCGCTCAATCTCCTTTGTATCTGCAGACGTTTGATCCAAATTATGACCTTGCTCTTGAACCAACTGAACCAACAATGGCTCCTACCACACCGCCACCACCCCTGCCATCCCCCGCCTCAGAGGCACCTTTTCCTCCTCCCCAGCCTCGCCCACCTCATCGCCCCACCTTTCCCAGTCGTACAAACACAGATCCCAGAGACTCTCATCAACGGACACCTTCATCTTTTGACAGCTCATTAGTGACACCAGTTCCTGAGCAAGACAACGTGTCATTTCACAAAGTGGTTATGGGTGGTGTGGCACTATTCTTCTCAGTGTCCCTTGTTTTGTCAGTAATATATGTCTCCTGCAAACGTTACCCTGGCGCCACTCGGCTGTTGCAGCAGAGTTCAGTGGGCCGAAAGCGAAGGAAAAAAAGTCAGGAGCCAGAGCAGAACCTGAGCTCCCAGCTCCAGGAATATTACATGAGCTACAACCCCGCCGCCACACCAGAAGCCTTGGAGGTGCTGGGAAATGGAACAGGTACCTGCACCTGCACCATATCCGGCTCCCGGGAATGTGAGAATGAATACTCGTGTCCCAGGCCATTACCTGGAGCTTGGATTGGAGACATCCCCACCATACACTAA

Function

symbol description
lrrtm4l1 Enables identical protein binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in brain; central nervous system; and retina. Orthologous to human LRRTM4 (leucine rich repeat transmembrane neuronal 4).

GO:

id name namespace
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function
GO:0042802 identical protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080327-15 Enables identical protein binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in brain; central nervous system; and retina. Orthologous to human LRRTM4 (leucine rich repeat transmembrane neuronal 4).

Ensembl:

ensembl_id ENSDARG00000080015

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003972 False 1668 mRNA 0.48 2 19310688 19339790
TCONS_00003973 True 1884 mRNA 0.48 2 19338255 19394491

Neighbor

gene id symbol gene type direction distance location
XLOC_002050 igsf9a coding upstream 216880 19026988 ~ 19093808 (+)
XLOC_002049 tmem230a coding upstream 289112 19017146 ~ 19021576 (+)
XLOC_002048 dpysl2b coding upstream 318217 18952271 ~ 18992471 (+)
XLOC_002047 bnip3lb coding upstream 374743 18911152 ~ 18935945 (+)
XLOC_002046 ppp2r2ab coding upstream 404016 18877362 ~ 18906672 (+)
XLOC_002052 vsig8a coding downstream 131348 19525839 ~ 19551118 (+)
XLOC_002053 atp6v1b2 coding downstream 160113 19554604 ~ 19566474 (+)
XLOC_002054 CABZ01059627.1 coding downstream 174561 19569052 ~ 19570346 (+)
XLOC_002055 CABZ01059627.2 coding downstream 179300 19573791 ~ 19575962 (+)
XLOC_002056 CABZ01059627.3 coding downstream 188798 19583289 ~ 19589733 (+)
XLOC_002045 AL928714.1 non-coding upstream 508253 18798927 ~ 18802435 (+)
XLOC_002043 NA non-coding upstream 1028253 18240550 ~ 18282435 (+)
XLOC_002042 NA non-coding upstream 1239182 18007123 ~ 18071506 (+)
XLOC_002040 BX927277.1 non-coding upstream 1420485 17890089 ~ 17890203 (+)
XLOC_002035 dre-mir-218b non-coding upstream 1615348 17695265 ~ 17695340 (+)
XLOC_002058 CABZ01059623.1 non-coding downstream 207843 19602334 ~ 19725594 (+)
XLOC_002063 NA non-coding downstream 982597 20377088 ~ 20381313 (+)
XLOC_002065 NA non-coding downstream 1053976 20448467 ~ 20452630 (+)
XLOC_002066 NA non-coding downstream 1107285 20501776 ~ 20502178 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_08120416_08124549 LRRTM4L1 coding CI01000304 null 8120416 ~ 8124597 (+)