RNA id: TCONS_00003972


Basic Information

Item Value
RNA id TCONS_00003972
length 1668
RNA type mRNA
GC content 0.48
exon number 2
gene id XLOC_002051
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 19310688 ~ 19394491 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTGCTTGCTGCGTAGCGAGAATCCATTCATATTCCGTTTGTTTGAACGACGGATGCCCATCATGGTAATTGCTGTTGGATTTATACCGGTTTGCTGTGATGTTGGATTAAGCAGAGGAGGCAACGCGTTTTAAAGTGTTTTGCGATATGGAGTCGGATCGATAATGATTTTAGTTGGGCTGTAATACTGCTCGGACTAAAGGTAAAAAGTGTCCGTTTGAGTGGATCCTGAGAGACTGAATATCTGTGCATTGACCGCAGGGATAAAACGCGAGTGGAATCAAAAGCGCGCGGCTGATATGGGTTCTCTTGCGTGTGACATGAGATTAGCAGGCCTCCTCCTGCTTCAAGCCTCCTCCCTCCTGCTGTTCAGTTCTGGGGAACGAATGTGCCCCTATAGCTGTCATTGTGAGGGAAAGATTGTCCACTGTGAGTCGTCTGCCTTCCAGGACGTCCCAGAAAATATTTCAGTTAGTTGCCAAGGTCTGTCTCTGCGCTACAATGACCTGCACACAATGCTCCCTTACCAGTTTGCCCATCTCAACCAGTTGCTTTGGCTTTACCTGGACCACAATCAAATCATGTTCGTTGATAGTCGTGCTTTCCAGGGGGTGCGGCGATTGAAGGAGTTGATCTTGAGCTCGAACAGGATTTCACAGCTCCACAATGTCACATTCCATGGAGTACCTAACCTTCGTAGTCTCGATCTGTCCTATAACAAGTTGCAGGAGTTGCAGCCTGGCCAGTTTTATGGTCTTCGAAAACTGCAAAATCTGCACTTGCGTTCAAATGGGCTTACGGCAATCCCTGTCCGTGCGTTTTTGGAGTGCCGAAGCTTGGAGTTTCTAGACTTGGGCTATAATCGGCTTCGGGTTCTAACTCGCACAGCATTCCTAGGTTTGTCTCGACTTATGGAACTCCACCTGGAACACAATCAGTTTTCACGAATCAACTTCTTTCTCTTTCCACGCCTTGCCAACCTTCGAGCCCTTTACCTACAGTGGAACCGTATTCGAGCTGTCAACCAAGGCCTTCCGTGGAGCTGGTATACCCTGCAGAGGCTTGACATCTCTGGCAATGAGATACAGGTACTAGATCCTGTAGTCTTTCAATGCCTTCCCAATCTTCAGGTTCTCAACTTGGAGTCTAACAAACTCGCCAATGTCTCTCAGGAAGTTGTGGCTGCCTGGATCTCACTAACAACTATTAGCCTTGCAGGCAATATGTGGGATTGTGGTCCGGGTATTTGTCCTCTTGTTGTCTGGCTCAAGAATTTCAGAGGCACCAAGGACACTAATATAATCTGCAGCAGTCCCAAACACCTTCAAGGGGAAAAAGTCATTGAGGCTTCAAAGAACTACATTGACTGTGATGATTATGAAATTACCGCTCAATCTCCTTTGTATCTGCAGACGTTTGATCCAAATTATGACCTTGCTCTTGAACCAACTGAACCAACAATGGCTCCTACCACACCGCCACCACCCCTGCCATCCCCCGCCTCAGAGGCACCTTTTCCTCCTCCCCAGCCTCGCCCACCTCATCGCCCCACCTTTCCCAGTCGTACAAACACAGATCCCAGAGACTCTCATCAACGGACACCTTCATCTTTTGACAGCTCATTAGTGACACCAGTTCCTGAGCAAGACAACGTGTCATTTCACAAA

Function

GO:

id name namespace
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function
GO:0042802 identical protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080327-15 Enables identical protein binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in brain; central nervous system; and retina. Orthologous to human LRRTM4 (leucine rich repeat transmembrane neuronal 4).

Ensembl:

ensembl_id ENSDART00000141364

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005702 lncRNA upstream 508253 18799100 ~ 18802435 (+) False XLOC_002045
TCONS_00003981 lncRNA downstream 243499 19583289 ~ 19589733 (+) False XLOC_002056
TCONS_00003980 lncRNA downstream 243499 19583289 ~ 19589733 (+) True XLOC_002056
TCONS_00003984 lncRNA downstream 262544 19602334 ~ 19615527 (+) False XLOC_002058
TCONS_00005866 lncRNA downstream 262606 19602396 ~ 19725594 (+) False XLOC_002058
TCONS_00005865 lncRNA downstream 262606 19602396 ~ 19725594 (+) False XLOC_002058
TCONS_00003971 mRNA upstream 216880 19039507 ~ 19093808 (+) False XLOC_002050
TCONS_00003970 mRNA upstream 216880 19039507 ~ 19093808 (+) False XLOC_002050
TCONS_00003969 mRNA upstream 216880 19039507 ~ 19093808 (+) True XLOC_002050
TCONS_00003968 mRNA upstream 227706 19026988 ~ 19082982 (+) False XLOC_002050
TCONS_00003967 mRNA upstream 289112 19017146 ~ 19021576 (+) True XLOC_002049
TCONS_00003975 mRNA downstream 186049 19525839 ~ 19551118 (+) False XLOC_002052
TCONS_00003974 mRNA downstream 186049 19525839 ~ 19551118 (+) False XLOC_002052
TCONS_00003976 mRNA downstream 188531 19528321 ~ 19549483 (+) True XLOC_002052
TCONS_00003977 mRNA downstream 214814 19554604 ~ 19566474 (+) True XLOC_002053
TCONS_00003978 mRNA downstream 229262 19569052 ~ 19570346 (+) True XLOC_002054
TCONS_00003965 other upstream 376147 18911175 ~ 18934541 (+) True XLOC_002047
TCONS_00003963 other upstream 414084 18892047 ~ 18896604 (+) True XLOC_002046
TCONS_00003957 other upstream 1059620 18240798 ~ 18251068 (+) True XLOC_002043
TCONS_00003954 other upstream 1420485 17890089 ~ 17890203 (+) True XLOC_002040
TCONS_00003947 other upstream 1589557 17715906 ~ 17721131 (+) False XLOC_002036
TCONS_00003994 other downstream 881576 20221366 ~ 20234045 (+) True XLOC_002060
TCONS_00003999 other downstream 1024639 20364429 ~ 20370089 (+) False XLOC_002062
TCONS_00004010 other downstream 1344246 20684036 ~ 20684150 (+) True XLOC_002071
TCONS_00004011 other downstream 1896774 21236564 ~ 21236678 (+) True XLOC_002075
TCONS_00004013 other downstream 2057530 21397320 ~ 21399705 (+) False XLOC_002077

Expression Profile

//