Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003963 |
| length | 566 |
| RNA type | processed_transcript |
| GC content | 0.46 |
| exon number | 3 |
| gene id | XLOC_002046 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 18877362 ~ 18906672 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0070262 | peptidyl-serine dephosphorylation | biological_process |
| GO:0072554 | blood vessel lumenization | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0000159 | protein phosphatase type 2A complex | cellular_component |
| GO:0019888 | protein phosphatase regulator activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-5474 | Predicted to enable protein phosphatase regulator activity. Acts upstream of or within blood vessel lumenization. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol. Orthologous to human PPP2R2A (protein phosphatase 2 regulatory subunit Balpha). |
| ensembl_id | ENSDART00000144860 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005702 | lncRNA | upstream | 89612 | 18799100 ~ 18802435 (+) | False | XLOC_002045 |
| TCONS_00005701 | lncRNA | upstream | 89612 | 18799100 ~ 18802435 (+) | False | XLOC_002045 |
| TCONS_00005703 | lncRNA | upstream | 89612 | 18799827 ~ 18802435 (+) | True | XLOC_002045 |
| TCONS_00003959 | lncRNA | upstream | 89697 | 18798927 ~ 18802350 (+) | False | XLOC_002045 |
| TCONS_00003960 | lncRNA | upstream | 89697 | 18799827 ~ 18802350 (+) | False | XLOC_002045 |
| TCONS_00003981 | lncRNA | downstream | 686685 | 19583289 ~ 19589733 (+) | False | XLOC_002056 |
| TCONS_00003980 | lncRNA | downstream | 686685 | 19583289 ~ 19589733 (+) | True | XLOC_002056 |
| TCONS_00003984 | lncRNA | downstream | 705730 | 19602334 ~ 19615527 (+) | False | XLOC_002058 |
| TCONS_00005866 | lncRNA | downstream | 705792 | 19602396 ~ 19725594 (+) | False | XLOC_002058 |
| TCONS_00005865 | lncRNA | downstream | 705792 | 19602396 ~ 19725594 (+) | False | XLOC_002058 |
| TCONS_00003958 | mRNA | upstream | 332634 | 18557102 ~ 18559413 (+) | True | XLOC_002044 |
| TCONS_00003956 | mRNA | upstream | 945884 | 17936482 ~ 17946163 (+) | True | XLOC_002041 |
| TCONS_00003955 | mRNA | upstream | 948009 | 17936441 ~ 17944038 (+) | False | XLOC_002041 |
| TCONS_00003951 | mRNA | upstream | 965749 | 17850934 ~ 17926298 (+) | False | XLOC_002039 |
| TCONS_00003964 | mRNA | downstream | 14548 | 18911152 ~ 18935945 (+) | False | XLOC_002047 |
| TCONS_00003966 | mRNA | downstream | 55667 | 18952271 ~ 18992471 (+) | True | XLOC_002048 |
| TCONS_00003967 | mRNA | downstream | 120542 | 19017146 ~ 19021576 (+) | True | XLOC_002049 |
| TCONS_00003968 | mRNA | downstream | 130384 | 19026988 ~ 19082982 (+) | False | XLOC_002050 |
| TCONS_00003971 | mRNA | downstream | 142903 | 19039507 ~ 19093808 (+) | False | XLOC_002050 |
| TCONS_00003957 | other | upstream | 640979 | 18240798 ~ 18251068 (+) | True | XLOC_002043 |
| TCONS_00003954 | other | upstream | 1001844 | 17890089 ~ 17890203 (+) | True | XLOC_002040 |
| TCONS_00003947 | other | upstream | 1170916 | 17715906 ~ 17721131 (+) | False | XLOC_002036 |
| TCONS_00003944 | other | upstream | 1196707 | 17695265 ~ 17695340 (+) | True | XLOC_002035 |
| TCONS_00003940 | other | upstream | 1437475 | 17454490 ~ 17454572 (+) | True | XLOC_002030 |
| TCONS_00003965 | other | downstream | 14571 | 18911175 ~ 18934541 (+) | True | XLOC_002047 |
| TCONS_00003994 | other | downstream | 1324762 | 20221366 ~ 20234045 (+) | True | XLOC_002060 |
| TCONS_00003999 | other | downstream | 1467825 | 20364429 ~ 20370089 (+) | False | XLOC_002062 |
| TCONS_00004010 | other | downstream | 1787432 | 20684036 ~ 20684150 (+) | True | XLOC_002071 |
| TCONS_00004011 | other | downstream | 2339960 | 21236564 ~ 21236678 (+) | True | XLOC_002075 |
