RNA id: TCONS_00005702


Basic Information

Item Value
RNA id TCONS_00005702
length 1890
lncRNA type inter_gene
GC content 0.37
exon number 5
gene id XLOC_002045
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 18798927 ~ 18802435 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTATACTGTAAAGCCTTGTAtatagaataataaaattaaacaacaattaaaattaactgaaatcaaTGGGAGTTTACTTGCTTGATAGAAAGATGTAACAATCATCTTATTTTAAGGAGCCTGAAAATGAGTTTCCATTACAAATAAACTTTATAAGATTGTtagtttttgcagtgtaaaacaaGGTGATTGGTGTGGTCAAGAAGAGAAATGTCTTTGAATCTGTTGGCTTTTAACAGAATGAAGATGTCAATGTGAGGCGAGATTGTGTCTGTGTAGATTGAGCTGTCTGAGCATCTACCTCAATGAAGACCTGGACACACTTGTTAAAGAATATGTGGTAAATGGTGGTAGAGCTGTCACTCTGAGGGAATTAAATCCGCTTGGTCCAGAGGAACCTGAAGATGAAGTTGTCTGGGTTCTGGCACCCACATGCCCCTTCTCCGCCAGAAACAACAATCCTCGCCTAAACAACAAGGATGCATGTTCTGGACTGTCTGCTTACGAACTCAAGCGCCTTGAGAACATCACGCACAAGGAAGCCTTCTTGTCGTCTCTGAAGATATGGCAAGTATGTGGACATTTTAGTAAAGgTAGTGGAGGATCTGAGGCAGTCAGTGAAGCCAAAGCCCAATGTCAAAAGGTTAATGGCTTCATTGGAAGAAAAATCTCTGCAGTCTCCCCGGAAATCCCtccgttttaaaataaaaaacctcaCCCCAAGTGAAGGGTTGACCCATAATCAAGTGAGAACAAGACTAATACTTGTATAATTTTCAGAtattataatgttgttgttgttgttacattaATAGGAAATTGCACAACTGGAGATAAAATGCATTGTGTTGTTGTTAACTTATTATCCACAGCCTTGTGACTTTTATTTTTCCAGGCTTTTAGGGGGTGATCAGGTCTTAAGGTCATTATCCTGAACTTGCATCCATTCCGTTCTCATGAATGCATATATGCTGTCTGCTTTAATGAAAAGATCTacgtatgtgtgcgtgcatgcgtgtgtgtgtaatattataagtgtgtgtttatacattCCAGGACATTGAATCCAGAGAGGCAGAGGAAGACATGGCAGGAAACACCATGGGCATCTACAAAGTACAATCAGAGGATCATGGTCAAGGTGATGGACGCTTCACTGATGTCCGTGTTGTGCTGGAAGGTGTGGAGGTTCTCCACAACCTGCAGAGTGTCACTCATGCATGGGTTATGTTATATGGCCTGATCTACGCACTCAATTTGAACTACCCTAAAAGCCTGAAGTGTACATTTTGAGGTGTACCAGAAAATCCTGATGGACCTGGACTCAACCAAGCTTTCCCCGAAAGTACAGACACTGAAACTGAAATTGCTCCAGTGATTTGgctaaaaataataacttatacAGCCCCTacccatttttttttcacattgtgctCCAACCCAGAGATATGTTAAAATGATTTCCTAGTTCTATAATGATATGTTAATTAGCAACTGAAAATGGATCTCTgagtacagttttattttttattaaattttttttttgggtgtcCAAGCAGTATTGTGATGTTCGAGTGTGGCTGTGTAAGTGGGTTCATATGGATGGTTTCCTAAATGTTGGCTGATGTTAACTTGGCTAAATCCAGAGTTTTGTATGaaagacaaatataaataaatctggaATTTTCCAGTTGGTCTAATTCAATGTGATGCATTGTTTGATTTGGTTTAGTATATAAGCATACATTAAACATgattcaaataaatgttatttatattttttagttaCCCCGATTTAGTTCTCTTAATTATTATGCAATTTAtacaataaactttattttttaaaataaatacagtttttattattaatttagaatAATTACACTTTA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006457 protein folding biological_process
GO:0010467 gene expression biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005863 lncRNA upstream 516665 18240550 ~ 18282435 (+) False XLOC_002043
TCONS_00005700 lncRNA upstream 727594 18007155 ~ 18071506 (+) True XLOC_002042
TCONS_00005862 lncRNA upstream 774614 18007123 ~ 18024486 (+) False XLOC_002042
TCONS_00003948 lncRNA upstream 1077969 17715949 ~ 17721131 (+) True XLOC_002036
TCONS_00003942 lncRNA upstream 1125007 17669673 ~ 17674093 (+) True XLOC_002033
TCONS_00003981 lncRNA downstream 780854 19583289 ~ 19589733 (+) False XLOC_002056
TCONS_00003980 lncRNA downstream 780854 19583289 ~ 19589733 (+) True XLOC_002056
TCONS_00003984 lncRNA downstream 799899 19602334 ~ 19615527 (+) False XLOC_002058
TCONS_00005866 lncRNA downstream 799961 19602396 ~ 19725594 (+) False XLOC_002058
TCONS_00005865 lncRNA downstream 799961 19602396 ~ 19725594 (+) False XLOC_002058
TCONS_00003958 mRNA upstream 239687 18557102 ~ 18559413 (+) True XLOC_002044
TCONS_00003956 mRNA upstream 852937 17936482 ~ 17946163 (+) True XLOC_002041
TCONS_00003955 mRNA upstream 855062 17936441 ~ 17944038 (+) False XLOC_002041
TCONS_00003953 mRNA upstream 872802 17875891 ~ 17926298 (+) True XLOC_002039
TCONS_00003952 mRNA upstream 885637 17851043 ~ 17913463 (+) False XLOC_002039
TCONS_00003961 mRNA downstream 74927 18877362 ~ 18906672 (+) False XLOC_002046
TCONS_00003962 mRNA downstream 76421 18878856 ~ 18906671 (+) False XLOC_002046
TCONS_00003964 mRNA downstream 108717 18911152 ~ 18935945 (+) False XLOC_002047
TCONS_00003966 mRNA downstream 149836 18952271 ~ 18992471 (+) True XLOC_002048
TCONS_00003967 mRNA downstream 214711 19017146 ~ 19021576 (+) True XLOC_002049
TCONS_00003957 other upstream 548032 18240798 ~ 18251068 (+) True XLOC_002043
TCONS_00003954 other upstream 908897 17890089 ~ 17890203 (+) True XLOC_002040
TCONS_00003947 other upstream 1077969 17715906 ~ 17721131 (+) False XLOC_002036
TCONS_00003944 other upstream 1103760 17695265 ~ 17695340 (+) True XLOC_002035
TCONS_00003940 other upstream 1344528 17454490 ~ 17454572 (+) True XLOC_002030
TCONS_00003963 other downstream 89612 18892047 ~ 18896604 (+) True XLOC_002046
TCONS_00003965 other downstream 108740 18911175 ~ 18934541 (+) True XLOC_002047
TCONS_00003994 other downstream 1418931 20221366 ~ 20234045 (+) True XLOC_002060
TCONS_00003999 other downstream 1561994 20364429 ~ 20370089 (+) False XLOC_002062
TCONS_00004010 other downstream 1881601 20684036 ~ 20684150 (+) True XLOC_002071

Expression Profile

//