RNA id: TCONS_00005700


Basic Information

Item Value
RNA id TCONS_00005700
length 620
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id XLOC_002042
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 18007123 ~ 18071506 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAGCACAATATCAGCTGTCTTTAAACTACACCATCTTAATCAAGATTTAAATATGCTTGctgttgcttctttctttcattgtgaATCCGAGCATGCAAAATTATGCCACACAGAAGGAGAACTGTGTTATACAATCCATTTTTAGAGAACAGATCTGTTGGACGAGTTGATTGATTGCAGCACCCTGTGAAAAGTGGATCACATCTCGGTGGTTCAGCACAGATGTGCCTCATCACAAAATGAATTCATATGTTCACGGCTGTGATATAATAAGGGCAGGTGAGGAGACTGTTCTCATGGGCAGACAAACAGATGCGCTGAGAGGCATGTATAACACAGAGAGAGGCTCACAACAAGTTATCCACAGCTCCAGGACAAAAATCATTTTCAACGAGTGGGCACAATCCCTTTAAAATGCCTTTCAACAATGCTTGATAACAGGTCTCATAGCGTGCACAGCTGGGCCAGATGGCTGCAGCAGGGAAGTCCAATACTGTGGCTTTTCGATGTCAGGGAGCGGAGAGCTAGCTGAGCTGGAAGTTGGCTTCATAACGGAGTTTCTCTTTGAGGTATGATTCATCACGAAATgagaacaatttgatgaatggcGTGGTATGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003948 lncRNA upstream 286024 17715949 ~ 17721131 (+) True XLOC_002036
TCONS_00003942 lncRNA upstream 333062 17669673 ~ 17674093 (+) True XLOC_002033
TCONS_00005861 lncRNA upstream 419278 17583381 ~ 17587877 (+) True XLOC_002032
TCONS_00005859 lncRNA upstream 519786 17459939 ~ 17487369 (+) False XLOC_002031
TCONS_00005863 lncRNA downstream 169044 18240550 ~ 18282435 (+) False XLOC_002043
TCONS_00003959 lncRNA downstream 727421 18798927 ~ 18802350 (+) False XLOC_002045
TCONS_00005702 lncRNA downstream 727594 18799100 ~ 18802435 (+) False XLOC_002045
TCONS_00005701 lncRNA downstream 727594 18799100 ~ 18802435 (+) False XLOC_002045
TCONS_00005864 lncRNA downstream 727993 18799499 ~ 18801204 (+) False XLOC_002045
TCONS_00003956 mRNA upstream 60992 17936482 ~ 17946163 (+) True XLOC_002041
TCONS_00003955 mRNA upstream 63117 17936441 ~ 17944038 (+) False XLOC_002041
TCONS_00003951 mRNA upstream 80857 17850934 ~ 17926298 (+) False XLOC_002039
TCONS_00003958 mRNA downstream 485596 18557102 ~ 18559413 (+) True XLOC_002044
TCONS_00003961 mRNA downstream 805856 18877362 ~ 18906672 (+) False XLOC_002046
TCONS_00003962 mRNA downstream 807350 18878856 ~ 18906671 (+) False XLOC_002046
TCONS_00003964 mRNA downstream 839646 18911152 ~ 18935945 (+) False XLOC_002047
TCONS_00003966 mRNA downstream 880765 18952271 ~ 18992471 (+) True XLOC_002048
TCONS_00003954 other upstream 116952 17890089 ~ 17890203 (+) True XLOC_002040
TCONS_00003947 other upstream 286024 17715906 ~ 17721131 (+) False XLOC_002036
TCONS_00003944 other upstream 311815 17695265 ~ 17695340 (+) True XLOC_002035
TCONS_00003940 other upstream 552583 17454490 ~ 17454572 (+) True XLOC_002030
TCONS_00003939 other upstream 553652 17453363 ~ 17453503 (+) True XLOC_002029
TCONS_00003957 other downstream 169292 18240798 ~ 18251068 (+) True XLOC_002043
TCONS_00003963 other downstream 820541 18892047 ~ 18896604 (+) True XLOC_002046
TCONS_00003965 other downstream 839669 18911175 ~ 18934541 (+) True XLOC_002047
TCONS_00003994 other downstream 2149860 20221366 ~ 20234045 (+) True XLOC_002060
TCONS_00003999 other downstream 2292923 20364429 ~ 20370089 (+) False XLOC_002062

Expression Profile

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