RNA id: TCONS_00003999


Basic Information

Item Value
RNA id TCONS_00003999
length 795
RNA type processed_transcript
GC content 0.44
exon number 5
gene id XLOC_002062
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20364009 ~ 20372269 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCGGAGGTACGTTGATAAAATATCAAATCTTACACTTTTCAGTTATTCGCTGAAGTTGATTGACGTCTAAAATCACACGTTGTAATACACATTTTTCTATCAAACTATTTGGATTACACACAGGTGTTTATAATCCCGTTTATTTGACACGTTAGCGCTTTTCTAGTGGTCTCCAAAGATAATTATCGACGTCGATATCTAACGTTAACTATCCTCTCGCTCAGTGTCAGCGCATATACATGACTATAAAACTAGTTGTCGAGTTTAAAACGAGCTCCGCGTTATTTCATTTTTACGTGTTTGAGGTAGGGCGTTGTGTTTGTTGTTTCGGTGTATATGCTCACGATTTCCGGTGTTTTTGATGATGACGCACAGCTTGCAGGACCTGCGGCAAGCAGCCGTCGCCTCCAAGGTTTTCGTTCAGAGAGATTACACCAGTGGCACCATCTGCAAGTTTCAGACCAAGTTCCCAGCCGAACTGGAGAGCAGGattgACAAGGTGCAGTTTGAGGAAACCATACAGACCCTGAATAATCTCTATGCAGAAGCAGAGAAGCTGGGCGGCAGGTCGTACCTGGAGGGCTGTTTGGCCTGTCTCACTGCGTACACAATCTTCCTCTGCATGGAAACACACTATGAGAAAGTGCTGAAAAAGATTGCTAAGTTCATCCAGGAGCAAAATGAGAAGATCTACGCTCCTCTTGGGCTTCTTTTGACCGACCCCATTGAGAGGGGGCTCAGGGTCGTGGAGATCACTATATTTGAGGATAGAAGTATTGGTTCAAGATAAAACA

Function

GO:

id name namespace
GO:0006612 protein targeting to membrane biological_process
GO:0043001 Golgi to plasma membrane protein transport biological_process
GO:0018230 peptidyl-L-cysteine S-palmitoylation biological_process
GO:0005795 Golgi stack cellular_component
GO:0002178 palmitoyltransferase complex cellular_component
GO:0019706 protein-cysteine S-palmitoyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-142 Predicted to be involved in Golgi to plasma membrane protein transport; peptidyl-L-cysteine S-palmitoylation; and protein targeting to membrane. Predicted to be located in membrane. Predicted to be part of palmitoyltransferase complex. Predicted to be active in Golgi stack. Orthologous to human GOLGA7 (golgin A7).

Ensembl:

ensembl_id ENSDART00000139022

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005869 lncRNA upstream 224380 20108557 ~ 20140049 (+) False XLOC_002059
TCONS_00003992 lncRNA upstream 229549 20132370 ~ 20134880 (+) True XLOC_002059
TCONS_00005865 lncRNA upstream 638835 19602396 ~ 19725594 (+) False XLOC_002058
TCONS_00005870 lncRNA downstream 6999 20377088 ~ 20381313 (+) True XLOC_002063
TCONS_00005871 lncRNA downstream 78378 20448467 ~ 20452630 (+) True XLOC_002065
TCONS_00005704 lncRNA downstream 131687 20501776 ~ 20502178 (+) True XLOC_002066
TCONS_00005872 lncRNA downstream 273246 20643335 ~ 20644918 (+) False XLOC_002069
TCONS_00005873 lncRNA downstream 273771 20643860 ~ 20645459 (+) True XLOC_002069
TCONS_00003995 mRNA upstream 107254 20256454 ~ 20257175 (+) True XLOC_002061
TCONS_00003993 mRNA upstream 130046 20180163 ~ 20234383 (+) False XLOC_002060
TCONS_00003991 mRNA upstream 217885 20128267 ~ 20146544 (+) False XLOC_002059
TCONS_00003989 mRNA upstream 223086 20108557 ~ 20141343 (+) False XLOC_002059
TCONS_00003990 mRNA upstream 226656 20113830 ~ 20137773 (+) False XLOC_002059
TCONS_00004003 mRNA downstream 21994 20392083 ~ 20401485 (+) False XLOC_002064
TCONS_00004004 mRNA downstream 22567 20392656 ~ 20402161 (+) True XLOC_002064
TCONS_00004005 mRNA downstream 219880 20589969 ~ 20609075 (+) False XLOC_002067
TCONS_00004006 mRNA downstream 220101 20590190 ~ 20605986 (+) False XLOC_002067
TCONS_00004007 mRNA downstream 238587 20608676 ~ 20626795 (+) True XLOC_002067
TCONS_00003994 other upstream 130384 20221366 ~ 20234045 (+) True XLOC_002060
TCONS_00003965 other upstream 1429888 18911175 ~ 18934541 (+) True XLOC_002047
TCONS_00003963 other upstream 1467825 18892047 ~ 18896604 (+) True XLOC_002046
TCONS_00003957 other upstream 2113361 18240798 ~ 18251068 (+) True XLOC_002043
TCONS_00003954 other upstream 2474226 17890089 ~ 17890203 (+) True XLOC_002040
TCONS_00004010 other downstream 313947 20684036 ~ 20684150 (+) True XLOC_002071
TCONS_00004011 other downstream 866475 21236564 ~ 21236678 (+) True XLOC_002075
TCONS_00004013 other downstream 1027231 21397320 ~ 21399705 (+) False XLOC_002077
TCONS_00004014 other downstream 1027278 21397367 ~ 21404971 (+) False XLOC_002077
TCONS_00004015 other downstream 1029626 21399715 ~ 21402166 (+) True XLOC_002077

Expression Profile

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