RNA id: TCONS_00004014


Basic Information

Item Value
RNA id TCONS_00004014
length 2500
RNA type processed_transcript
GC content 0.36
exon number 10
gene id XLOC_002077
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21397320 ~ 21404971 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGACATATTTCTTCCTGTTTTTTCCCTGGTAAGTacgattaataaaacatataacaatattttagttaaaagactgctttattacctttttatcgttatttaaaatgatttttgtctAGTATGAAGCGCCCATGGAAAGTACAGCAGTGAATTacgtttaatattgttaataagatCAGACTTTATTTCATTAAGATCAAACTGAGCTATGAGTGGTTAAATGTAACTTAAACAAGCATTTACCTAatgattttttacctttttatgcgTTTTCCTCAACAGTAAATATGAtatctgttcatttacagttgtTTGTCCGTATTTTTCTAAACTGCCGTGCGCGGGAAGTGACGTGACGTCCCAATCACCCACTCACTCCTTCTGCACCTGCGTGAGTCTGACTGGATTAACGGTAAACGTCAGCTTTTCAGTGAGAGTGTAAAAggtatgttaattatttaatagaaatataaatgttttctttgtacagTGCATTGAACAAGGGATAGCATTCAAAGTTTGTGACACTGTGTAGTTTGGTTGATATACGTTAACGTTACCTTTAATGAATACTAACGTTAACGTGTTTCAAACGTAACACCTGACCgcctgtgtttgtttgcatattaataactaatttcatatttttactgaCGTTTTCAAATGTTAGCTTTAATTTGACCGACGTATTAAGGCTGTGTGACCGAGTTTCAGTGGAACAGCTTTGCTGGTTTTTAAGTAAGTTATAAGTTAGACTCGCGTGAATTGGAGGCATTTGTAACTCGGTATGAGGGGAAATACACACTCGTAAAGTTATttttagtggtgggccgttatcagcATTAACGTGCTGCTTTAACGCGAGACTTATCGcgcgataaaaaaaaatatatcgccgttaatctattctcaacgttgggttgggagctgggtgacTTTCATactttgatattttagcgcggatgtatacctgaccggtgagccgtctgacaaacaaGTGCCCTTATGAATccaatcagcaggatgcctgactttaactgcagttcggcagtttcactttaactcactaacatttcattcatcccgcgtgacaaactggggtaataGACGCAAATAAGAAACAAGAACtgatgagagtgttatggaatttaataacgctcgccaaatggaacgaaaaaaaacttccgcatttcgcgacgtgtgtttgtgtgtacagagatAATAACAGTGATGCAGTAAGTGTGTGACACTTAAaagtatttatagtgtttacactgTCATGCGTTTTCGTCCTCAAATACAACGTGTACCTTAAAGCacacaattaaatgtttgttgtagtcGAGTTGAACTGTCatggatatttatttattcacttttaagaACCTCAAGGGCAGCTAATATGAAGATATAAAGATGAGTTGTTCTTCCACAGTCTTAAAATTCTTCAAACTAATTGTCAGTTCGATTCATTatagcaaataatactttctttACTATTAGGAGATCAggagttttattttaatgaaacctTGATGATAGAGTGAACTACACATAGTGTTATCGCAAATGAAATCTTTTTATGTAGATTTTGAGTCTGAGTTTTTTTGCAcatataaggttcactgatattttgctttgttcACTTTCAGGTTCTTtcattttggttataagtacatGTTATAGgtgtgttggtgtaaaaattgatgctgactggtgtgttggtgtaaaaagtgatgctgactgaactcaggcagttgtgctggaccctctgtaccttatacaggagatgactgtaaactttgaagtttaagagGTTCTGTaattttggttataagtacaagaactcaggcagttgtgctggaccatCTGTACTTAATACAGGGAATGACAGTAAACTTCCAcgtttaagagcCACCTGATGATGAGAGAGACAATTTCAATGTGGGCATCTTGATGaagaaaagtCCACAGTCACAATAACAAGATCATTGGGCTGTCCCCTAATTGTGGTGAGCTACATGTTTAGTCTCTTATGTGCTAAACATTATGTAGCCTAAGGAAGCAGCCCTGACTCTGGAGTTTATATGAagGAGCGTGCTGAGTAACTATCCAAAATGTAGGTCCAAAGCAGAAAAAAGAGCACCAAGCAGAAACATACCATCTAAACTCCTTCGATTCCTGTCAGACCAGAAAGACTTTCAGAAACCTTGGAAGATTTAAAGccattGAAGTATCAGTATTGGAGCGAAAGAAGACCCTGTTTTATCGTCAGTTTCCTGCCATCTTGCAGTTAACCTGGTTTCTTAATGTAAAGTACTTGTAATTTGCCCACTTGTCCTCAATTATCTTAAAagctaacatttaaaactaatttgctaTGAGATTATTTGCCAAGACTTCTCACTGTGTGATTCACATGTCaatatgtattattgtgtgtataactagctatttggaattcaaatgatttgtattcattaaagaatctgttttaat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000135157

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005877 lncRNA upstream 189167 21179484 ~ 21208200 (+) False XLOC_002074
TCONS_00005878 lncRNA upstream 208231 21179547 ~ 21189136 (+) True XLOC_002074
TCONS_00005876 lncRNA upstream 290657 21103921 ~ 21106710 (+) True XLOC_002073
TCONS_00005875 lncRNA upstream 658691 20731614 ~ 20738676 (+) True XLOC_002072
TCONS_00005874 lncRNA upstream 729506 20665016 ~ 20667861 (+) True XLOC_002070
TCONS_00004023 lncRNA downstream 39694 21444665 ~ 21452135 (+) False XLOC_002078
TCONS_00005879 lncRNA downstream 137550 21542521 ~ 21543562 (+) True XLOC_002081
TCONS_00004040 lncRNA downstream 265892 21670863 ~ 21672339 (+) False XLOC_002085
TCONS_00004041 lncRNA downstream 266248 21671219 ~ 21674300 (+) False XLOC_002085
TCONS_00004043 lncRNA downstream 267282 21672253 ~ 21674458 (+) True XLOC_002085
TCONS_00004008 mRNA upstream 764588 20628698 ~ 20632779 (+) False XLOC_002068
TCONS_00004009 mRNA upstream 764792 20630444 ~ 20632575 (+) True XLOC_002068
TCONS_00004007 mRNA upstream 770572 20608676 ~ 20626795 (+) True XLOC_002067
TCONS_00004005 mRNA upstream 788292 20589969 ~ 20609075 (+) False XLOC_002067
TCONS_00004006 mRNA upstream 791381 20590190 ~ 20605986 (+) False XLOC_002067
TCONS_00004016 mRNA downstream 29678 21434649 ~ 21444731 (+) False XLOC_002078
TCONS_00004017 mRNA downstream 29746 21434717 ~ 21443884 (+) False XLOC_002078
TCONS_00004022 mRNA downstream 39683 21444654 ~ 21470593 (+) False XLOC_002078
TCONS_00004024 mRNA downstream 39694 21444665 ~ 21470590 (+) True XLOC_002078
TCONS_00004025 mRNA downstream 106524 21511495 ~ 21521507 (+) True XLOC_002079
TCONS_00004011 other upstream 160689 21236564 ~ 21236678 (+) True XLOC_002075
TCONS_00004010 other upstream 713217 20684036 ~ 20684150 (+) True XLOC_002071
TCONS_00003999 other upstream 1027278 20364429 ~ 20370089 (+) False XLOC_002062
TCONS_00003994 other upstream 1163322 20221366 ~ 20234045 (+) True XLOC_002060
TCONS_00003965 other upstream 2462826 18911175 ~ 18934541 (+) True XLOC_002047
TCONS_00004018 other downstream 29819 21434790 ~ 21443112 (+) False XLOC_002078
TCONS_00004019 other downstream 29820 21434791 ~ 21437310 (+) False XLOC_002078
TCONS_00004020 other downstream 29823 21434794 ~ 21435976 (+) False XLOC_002078
TCONS_00004021 other downstream 36007 21440978 ~ 21443412 (+) False XLOC_002078
TCONS_00004038 other downstream 265860 21670831 ~ 21674289 (+) False XLOC_002085

Expression Profile

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