RNA id: TCONS_00004019


Basic Information

Item Value
RNA id TCONS_00004019
length 756
RNA type processed_transcript
GC content 0.46
exon number 3
gene id XLOC_002078
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21434649 ~ 21470593 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTATCACGTCACTGAGAAGCAGCGGCGGCGAGCGAGCTCTGGACCACAAACTACTGCCGTACGGGCACGGCGGAGCGGATCAATCTAGTCTCAGGTCCAGACAGCGCGAGGAAGATGGCGGACGACCCCAGCGCAGCGGACAGGAACGTGGAAATTTGGAAGATTAAGAAGTTGATCAAAAGCCTCGAGGCGGCTAGAGGCAATGGCACCAGTATGATCTCCCTCATCATCCCACCCAAGGATCAGATCTCGCGTGTTGCGAAGATGTTGGCTGATGAGTTCGGCACAGCTTCGAACATCAAGAGCAGAGTCAACAGACTCTCTGTACTGGGAGCCATTACTTCAGTACAGCAGAGACTCAAACTCTACAACAAAGGTAAGAGTATGGCTTTACttccatttacattttttttcattcattcaaattcTTCAATTTTTTACTTCTCTGTAATAGTGTGGTTTTAATGTAAAAACTGGCAAGTTCATACAGATATTGTGTATGGGTGGATATAATTGAGCTTTCCACCCTATCTAATCTCTTCATTTGGTGTGGTTTGTTCTGATACCGTCACTAAAGTCTGCTGTTTGTCTCGCAGTGCCTCCTAATGGCCTGGTGGTGTATTGTGGCACCATAGTGACAGAGGAAGGCAAAGAGAAGAAAGTTAACATTGATTTTGAGCCATTTAAACCAATCAACACATCCTTGTATTTATGTGACAACAAATTCCATACTGAGGTAAGCAGggtgtccacgg

Function

GO:

id name namespace
GO:0006415 translational termination biological_process
GO:0002184 cytoplasmic translational termination biological_process
GO:0007420 brain development biological_process
GO:0018444 translation release factor complex cellular_component
GO:0005829 cytosol cellular_component
GO:0016149 translation release factor activity, codon specific molecular_function
GO:0003747 translation release factor activity molecular_function
GO:1990825 sequence-specific mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-021029-1 Predicted to enable sequence-specific mRNA binding activity and translation release factor activity, codon specific. Acts upstream of or within brain development. Predicted to be located in cytoplasm. Predicted to be part of translation release factor complex. Predicted to be active in cytosol. Orthologous to human ETF1 (eukaryotic translation termination factor 1).

Ensembl:

ensembl_id ENSDART00000146857

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005877 lncRNA upstream 226591 21179484 ~ 21208200 (+) False XLOC_002074
TCONS_00005878 lncRNA upstream 245655 21179547 ~ 21189136 (+) True XLOC_002074
TCONS_00005876 lncRNA upstream 328081 21103921 ~ 21106710 (+) True XLOC_002073
TCONS_00005875 lncRNA upstream 696115 20731614 ~ 20738676 (+) True XLOC_002072
TCONS_00005874 lncRNA upstream 766930 20665016 ~ 20667861 (+) True XLOC_002070
TCONS_00004023 lncRNA downstream 7355 21444665 ~ 21452135 (+) False XLOC_002078
TCONS_00005879 lncRNA downstream 105211 21542521 ~ 21543562 (+) True XLOC_002081
TCONS_00004040 lncRNA downstream 233553 21670863 ~ 21672339 (+) False XLOC_002085
TCONS_00004041 lncRNA downstream 233909 21671219 ~ 21674300 (+) False XLOC_002085
TCONS_00004043 lncRNA downstream 234943 21672253 ~ 21674458 (+) True XLOC_002085
TCONS_00004012 mRNA upstream 5793 21395298 ~ 21428998 (+) True XLOC_002076
TCONS_00004008 mRNA upstream 802012 20628698 ~ 20632779 (+) False XLOC_002068
TCONS_00004009 mRNA upstream 802216 20630444 ~ 20632575 (+) True XLOC_002068
TCONS_00004007 mRNA upstream 807996 20608676 ~ 20626795 (+) True XLOC_002067
TCONS_00004006 mRNA upstream 828805 20590190 ~ 20605986 (+) False XLOC_002067
TCONS_00004022 mRNA downstream 7344 21444654 ~ 21470593 (+) False XLOC_002078
TCONS_00004024 mRNA downstream 7355 21444665 ~ 21470590 (+) True XLOC_002078
TCONS_00004025 mRNA downstream 74185 21511495 ~ 21521507 (+) True XLOC_002079
TCONS_00004026 mRNA downstream 85235 21522545 ~ 21530675 (+) True XLOC_002080
TCONS_00004027 mRNA downstream 122295 21559605 ~ 21647604 (+) False XLOC_002082
TCONS_00004014 other upstream 29820 21397367 ~ 21404971 (+) False XLOC_002077
TCONS_00004015 other upstream 32625 21399715 ~ 21402166 (+) True XLOC_002077
TCONS_00004013 other upstream 35086 21397320 ~ 21399705 (+) False XLOC_002077
TCONS_00004011 other upstream 198113 21236564 ~ 21236678 (+) True XLOC_002075
TCONS_00004010 other upstream 750641 20684036 ~ 20684150 (+) True XLOC_002071
TCONS_00004021 other downstream 3668 21440978 ~ 21443412 (+) False XLOC_002078
TCONS_00004038 other downstream 233521 21670831 ~ 21674289 (+) False XLOC_002085
TCONS_00004039 other downstream 233547 21670857 ~ 21673021 (+) False XLOC_002085
TCONS_00004042 other downstream 233912 21671222 ~ 21674289 (+) False XLOC_002085
TCONS_00004046 other downstream 264241 21701551 ~ 21818605 (+) False XLOC_002083

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU130831 True 465 TUCP 0.61 3 CM030133.1 12326097 ~ 12328282 (-)