RNA id: TCONS_00004024


Basic Information

Item Value
RNA id TCONS_00004024
length 2503
RNA type mRNA
GC content 0.48
exon number 13
gene id XLOC_002078
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 21434649 ~ 21470593 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTCACTGCGAGTTTCGGGGAACAAACATGGAGACGGAGATGGAGGACAAAACCTTAGAGCAGATGAACACCTCTGTCATGGACCCGCAGACTGCAGACCGCTCTCCAAAGATCACATTGATTAAGTCTACCTTTATCTGTCCTCAGGTGAGTAATGGACCCTTGACGGGCTCTAGGAAGCGGCCGTCAGAGGGAAATTACGAGAAGGAAAAGGACGTGTGCATCCAGCTCTTTGATCAATGGTCTGAGGCCGACCAGGTGGAGTTTGTGGAACACCTGATCTCACGCATGTGCCATTACCAACACGGCCACATAAACTCCTACCTCAAACCCATGCTCCAAAGGGATTTCATTACGGCACTGCCAGCTCAGGGTCTGGATCATATAGCGGAGAATATCTTGTCGTTCCTGGATGCTCGCTCGTTGTGTTCGGCTGAGCTGGTGTGTAAGGAATGGCAGCGTGTCATATCTGAAGGCATGTTGTGGAAGAAGCTGATTGAGAGGATGGTTCGGACAGACCCGCTGTGGAAAGGCCTATCAGAGAGACACCAGTGGGAAAAATACCTGTTCAAGAACCGCACAACAGAAGTTCCTCCAAACTCGTACTACCGCTCTCTTTATCCAAAAATCATTCAGGACATAGAGaccaTTGAAGCAAACTGGAGGTGTGGTCGACATAACCTGCAGAGGATTCAGTGTAGGTCGGAGAACAGCAAAGGTGTTTACTGCCTCCAGTACGATGACGAGAAAATCATCAGCGGTCTACGAGACAATTCTATCAAGATATGGGATAAGCAGACTCTGGAGTGTTTGAAGATCCTGACGGGGCACACGGGCTCTGTGCTGTGTCTGCAATACGATGAGAGAGTCATTGTTACCGGCTCCTCTGATTCCACTGTCAGAGTGTGGGATGTGAATTCGGGGGAGGTTTTGAACACTCTGATCCATCACAACGAGGCCGTGCTCCACCTGCGGTTCTGTAACGGGCTGATGGTCACCTGCTCAAAGGATCGCTCCATTGCAGTGTGGGACATGGCCTCTCCCACGGACATAAGCCTCCGCCGGGTACTCGTTGGACACAGGGCTGCAGTCAATGTGGTTGATTTTGATGACAAGTACATTGTCTCTGCCTCTGGGGATCGGACTATAAAGGTATGGAGTACAAGCACCTGCGAGTTTGTTCGGACACTAAATGGTCATAAGCGAGGAATTGCTTGCTTGCAGTACAGAGACCGACTTGTGGTCAGCGGCTCCTCAGACAACaccatcaggCTGTGGGATATTGAGTGCGGAGCATGTTTGCGGGTTTTGGAAGGACACGAGGAGCTTGTTCGCTGTATTCGTTTTGACAACAAACGGATCGTGAGTGGAGCGTATGACGGTAAAATTAAAGTATGGGACCTACAAGCTGCACTTGATCCACGCGCTCCAGCCAGCACTCTGTGTCTACGCACACTAGTGGAACATTCAGGCCGAGTGTTCAGGCTCCAGTTTGACGAGTTCCAGATCATCAGCAGTTCCCATGATGACACTATCCTCATCTGGGACTTCCTCAACGTCTCAACCAATGGCCAGACTGAAGGACGATCGCCATCCCGCACTTATACCTATATATCCAGATAGCAGGGAAGCCCCGGTGGCGTGCggagtgtgtgcgagtgtgtgtgggGACTGTTCGGGTGACCCAGTCTCTGTGGAAGTGTGCCAGGATCAAAAGGTTGAGGAACGCCACCAAACACCCCATTTTCCCCACTTGCCCGCCTCTCTCCATCTGTCCGTTTTATTTCTCCCCCTCTTCAGTCGTTTGGAGGGCCACAAACATAAACCATGTCAgttctctttctccctctctctgcggaggaggaggtggagaaaAGATGGAGAGAGCGATGCCATTAAACAGAGAACATGAGGGTGGGCAACCCTCACCCCGTCGCCCTGTGCAGAGTGACGGCTGCCCCGGCTCCGCCCCCTGGGCCCATGAACTCTGTATCTatcttttgttcattttatttttattgattaagaaaaaaagaaaaactaaagagAGGAGGCAAGGTCTGAGTGCCTTCCTTCCCTCAGGACTGTTCTGCATGAATGAGCGAGCGATGGGACGTGTAATGTGTGCTGGTCAACCCCTCAGTTTCtgtcttatgttttttttcttttgtttttttatgctttggttgttgttttttttaagttgggAAATTGACttcatatttcttttttcttgtggAAATCGTATGAATAACTGTAGTTTTTTGACTCTTCTCCTGTTATGTCGCTCCATTTCTCGTTTTTAGCGCTGTCCGTCTCGTTCCCTTTCTCACTGTCTGCTCGTCTAGGTTCTGAATGACCCATAACTGATCTGAATTTAGTTGTAAACAGAATTGTCTTGTCTAAAATGGTGTTGTATAttgaaaagattttttaaagaaaaaaaagcgtTATTAATAAGAATAAAGTACTTGACTGTGAAGGAGTGTTAAGAAGATTGCA

Function

GO:

id name namespace
GO:0006415 translational termination biological_process
GO:0002184 cytoplasmic translational termination biological_process
GO:0007420 brain development biological_process
GO:0018444 translation release factor complex cellular_component
GO:0005829 cytosol cellular_component
GO:0016149 translation release factor activity, codon specific molecular_function
GO:0003747 translation release factor activity molecular_function
GO:1990825 sequence-specific mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2903 Predicted to enable protein dimerization activity. Acts upstream of or within sprouting angiogenesis. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in brain; head mesenchyme; oral epithelium; pectoral fin; and retina. Orthologous to several human genes including FBXW11 (F-box and WD repeat domain containing 11).

Ensembl:

ensembl_id ENSDART00000019252

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005877 lncRNA upstream 236465 21179484 ~ 21208200 (+) False XLOC_002074
TCONS_00005878 lncRNA upstream 255529 21179547 ~ 21189136 (+) True XLOC_002074
TCONS_00005876 lncRNA upstream 337955 21103921 ~ 21106710 (+) True XLOC_002073
TCONS_00005875 lncRNA upstream 705989 20731614 ~ 20738676 (+) True XLOC_002072
TCONS_00005874 lncRNA upstream 776804 20665016 ~ 20667861 (+) True XLOC_002070
TCONS_00005879 lncRNA downstream 71931 21542521 ~ 21543562 (+) True XLOC_002081
TCONS_00004040 lncRNA downstream 200273 21670863 ~ 21672339 (+) False XLOC_002085
TCONS_00004041 lncRNA downstream 200629 21671219 ~ 21674300 (+) False XLOC_002085
TCONS_00004043 lncRNA downstream 201663 21672253 ~ 21674458 (+) True XLOC_002085
TCONS_00005705 lncRNA downstream 274672 21745262 ~ 21745505 (+) True XLOC_002088
TCONS_00004017 mRNA upstream 781 21434717 ~ 21443884 (+) False XLOC_002078
TCONS_00004012 mRNA upstream 15667 21395298 ~ 21428998 (+) True XLOC_002076
TCONS_00004008 mRNA upstream 811886 20628698 ~ 20632779 (+) False XLOC_002068
TCONS_00004009 mRNA upstream 812090 20630444 ~ 20632575 (+) True XLOC_002068
TCONS_00004007 mRNA upstream 817870 20608676 ~ 20626795 (+) True XLOC_002067
TCONS_00004025 mRNA downstream 40905 21511495 ~ 21521507 (+) True XLOC_002079
TCONS_00004026 mRNA downstream 51955 21522545 ~ 21530675 (+) True XLOC_002080
TCONS_00004027 mRNA downstream 89015 21559605 ~ 21647604 (+) False XLOC_002082
TCONS_00004028 mRNA downstream 89015 21559605 ~ 21648767 (+) False XLOC_002082
TCONS_00004029 mRNA downstream 93396 21563986 ~ 21648767 (+) False XLOC_002082
TCONS_00004021 other upstream 1253 21440978 ~ 21443412 (+) False XLOC_002078
TCONS_00004018 other upstream 1553 21434790 ~ 21443112 (+) False XLOC_002078
TCONS_00004019 other upstream 7355 21434791 ~ 21437310 (+) False XLOC_002078
TCONS_00004020 other upstream 8689 21434794 ~ 21435976 (+) False XLOC_002078
TCONS_00004015 other upstream 42499 21399715 ~ 21402166 (+) True XLOC_002077
TCONS_00004038 other downstream 200241 21670831 ~ 21674289 (+) False XLOC_002085
TCONS_00004039 other downstream 200267 21670857 ~ 21673021 (+) False XLOC_002085
TCONS_00004042 other downstream 200632 21671222 ~ 21674289 (+) False XLOC_002085
TCONS_00004046 other downstream 230961 21701551 ~ 21818605 (+) False XLOC_002083
TCONS_00004047 other downstream 230961 21701551 ~ 21820057 (+) False XLOC_002083

Expression Profile

//