RNA id: TCONS_00005873


Basic Information

Item Value
RNA id TCONS_00005873
length 394
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id XLOC_002069
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20643335 ~ 20645459 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCCACTGACATCACTTCTGGTTCTGTTGAGCCGATCAGAAAGAGTCGACTCATGATGTCCTTCTCCTGACAAAAACAAATTTACGAGGAGTCAGAGGAACAGTTGGCAATGAATAAACACTGCTGAGGTTTTGGGAGAAGTGGAGGAAAGTATTGACCTGCCTCCTGCTTCTCTTCACTGGAGTCTCTCGACCGCTCTTCTGCTGCGGTGACCTCAATGGAAACTGGCGGCTGATGTGTTTCGTTACTTCTACAAGTGGAGACACACGGAAGAATGAAGTAATGAAGTTTATCTGCGACCAGAAGAAAAACTCATGACTTCAAGCCTCATAATCGCAAAATAACCTCAGGCAAGATTcccacacacagaaacacacactcaaactcgacaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005704 lncRNA upstream 141682 20501776 ~ 20502178 (+) True XLOC_002066
TCONS_00005871 lncRNA upstream 191230 20448467 ~ 20452630 (+) True XLOC_002065
TCONS_00005870 lncRNA upstream 262547 20377088 ~ 20381313 (+) True XLOC_002063
TCONS_00004001 lncRNA upstream 272162 20364620 ~ 20371698 (+) False XLOC_002062
TCONS_00005874 lncRNA downstream 19557 20665016 ~ 20667861 (+) True XLOC_002070
TCONS_00005875 lncRNA downstream 86155 20731614 ~ 20738676 (+) True XLOC_002072
TCONS_00005876 lncRNA downstream 458462 21103921 ~ 21106710 (+) True XLOC_002073
TCONS_00005877 lncRNA downstream 534025 21179484 ~ 21208200 (+) False XLOC_002074
TCONS_00005878 lncRNA downstream 534088 21179547 ~ 21189136 (+) True XLOC_002074
TCONS_00004008 mRNA upstream 11081 20628698 ~ 20632779 (+) False XLOC_002068
TCONS_00004009 mRNA upstream 11285 20630444 ~ 20632575 (+) True XLOC_002068
TCONS_00004007 mRNA upstream 17065 20608676 ~ 20626795 (+) True XLOC_002067
TCONS_00004005 mRNA upstream 34785 20589969 ~ 20609075 (+) False XLOC_002067
TCONS_00004006 mRNA upstream 37874 20590190 ~ 20605986 (+) False XLOC_002067
TCONS_00004012 mRNA downstream 749839 21395298 ~ 21428998 (+) True XLOC_002076
TCONS_00004016 mRNA downstream 789190 21434649 ~ 21444731 (+) False XLOC_002078
TCONS_00004017 mRNA downstream 789258 21434717 ~ 21443884 (+) False XLOC_002078
TCONS_00004022 mRNA downstream 799195 21444654 ~ 21470593 (+) False XLOC_002078
TCONS_00004024 mRNA downstream 799206 21444665 ~ 21470590 (+) True XLOC_002078
TCONS_00003999 other upstream 273771 20364429 ~ 20370089 (+) False XLOC_002062
TCONS_00003994 other upstream 409815 20221366 ~ 20234045 (+) True XLOC_002060
TCONS_00003965 other upstream 1709319 18911175 ~ 18934541 (+) True XLOC_002047
TCONS_00003963 other upstream 1747256 18892047 ~ 18896604 (+) True XLOC_002046
TCONS_00003957 other upstream 2392792 18240798 ~ 18251068 (+) True XLOC_002043
TCONS_00004010 other downstream 38577 20684036 ~ 20684150 (+) True XLOC_002071
TCONS_00004011 other downstream 591105 21236564 ~ 21236678 (+) True XLOC_002075
TCONS_00004013 other downstream 751861 21397320 ~ 21399705 (+) False XLOC_002077
TCONS_00004014 other downstream 751908 21397367 ~ 21404971 (+) False XLOC_002077
TCONS_00004015 other downstream 754256 21399715 ~ 21402166 (+) True XLOC_002077

Expression Profile

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