RNA id: TCONS_00003957


Basic Information

Item Value
RNA id TCONS_00003957
length 565
RNA type processed_transcript
GC content 0.42
exon number 5
gene id XLOC_002043
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 18240550 ~ 18282435 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAACGCGCGGCATTTGCAAACACGTGCTAATGACGCAATCAATTGGAGACGCCTTTTCCCGCGAACTCATCTCTCCTGGGAGAGCAGTCTTTATAGGAAACAtgccctttgtcttcatgctgggAGTAAGAAAAAACAGAAAGCGTAAAATACCTCAAGAGGATGCAGAACATTACATTTGTTGTAAAAGTGACAAACCTGCAAGTGCAATTCATCAACAATTACAAAGGAGGATGAGTTTTCACCACTGAAGCTTTATTCAGAGGGGATTTTGTTCTTGAGTACAAGTTTGGGTTCATGGATGCATCGAAAGAAGATGGGTCTTTTGGGAGACTTGTAAATGATGACCACAAAGCTCCTAACTGCAAAATGAAAATCATATCTTTGCTGTGTGCAACATACTTCCAGGAGAAGATATAACCTACAATTATGGAGATTCTGGTTATGTCCCATAATGCTTCTGTCTCCTCACCTGCTTTGGACAACGTGAAGATGAGTGATCCTCACAAACAAACTGAGCCACAACAGTCAGACAAAGCAAGAAGATCAGGGAATAAGACGGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000131404

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005700 lncRNA upstream 169292 18007155 ~ 18071506 (+) True XLOC_002042
TCONS_00005862 lncRNA upstream 216312 18007123 ~ 18024486 (+) False XLOC_002042
TCONS_00003948 lncRNA upstream 519667 17715949 ~ 17721131 (+) True XLOC_002036
TCONS_00003942 lncRNA upstream 566705 17669673 ~ 17674093 (+) True XLOC_002033
TCONS_00005861 lncRNA upstream 652921 17583381 ~ 17587877 (+) True XLOC_002032
TCONS_00003959 lncRNA downstream 547859 18798927 ~ 18802350 (+) False XLOC_002045
TCONS_00005702 lncRNA downstream 548032 18799100 ~ 18802435 (+) False XLOC_002045
TCONS_00005701 lncRNA downstream 548032 18799100 ~ 18802435 (+) False XLOC_002045
TCONS_00005864 lncRNA downstream 548431 18799499 ~ 18801204 (+) False XLOC_002045
TCONS_00003960 lncRNA downstream 548759 18799827 ~ 18802350 (+) False XLOC_002045
TCONS_00003956 mRNA upstream 294635 17936482 ~ 17946163 (+) True XLOC_002041
TCONS_00003955 mRNA upstream 296760 17936441 ~ 17944038 (+) False XLOC_002041
TCONS_00003951 mRNA upstream 314500 17850934 ~ 17926298 (+) False XLOC_002039
TCONS_00003953 mRNA upstream 314500 17875891 ~ 17926298 (+) True XLOC_002039
TCONS_00003952 mRNA upstream 327335 17851043 ~ 17913463 (+) False XLOC_002039
TCONS_00003958 mRNA downstream 306034 18557102 ~ 18559413 (+) True XLOC_002044
TCONS_00003961 mRNA downstream 626294 18877362 ~ 18906672 (+) False XLOC_002046
TCONS_00003962 mRNA downstream 627788 18878856 ~ 18906671 (+) False XLOC_002046
TCONS_00003964 mRNA downstream 660084 18911152 ~ 18935945 (+) False XLOC_002047
TCONS_00003966 mRNA downstream 701203 18952271 ~ 18992471 (+) True XLOC_002048
TCONS_00003954 other upstream 350595 17890089 ~ 17890203 (+) True XLOC_002040
TCONS_00003947 other upstream 519667 17715906 ~ 17721131 (+) False XLOC_002036
TCONS_00003944 other upstream 545458 17695265 ~ 17695340 (+) True XLOC_002035
TCONS_00003940 other upstream 786226 17454490 ~ 17454572 (+) True XLOC_002030
TCONS_00003939 other upstream 787295 17453363 ~ 17453503 (+) True XLOC_002029
TCONS_00003963 other downstream 640979 18892047 ~ 18896604 (+) True XLOC_002046
TCONS_00003965 other downstream 660107 18911175 ~ 18934541 (+) True XLOC_002047
TCONS_00003994 other downstream 1970298 20221366 ~ 20234045 (+) True XLOC_002060
TCONS_00003999 other downstream 2113361 20364429 ~ 20370089 (+) False XLOC_002062
TCONS_00004010 other downstream 2432968 20684036 ~ 20684150 (+) True XLOC_002071

Expression Profile

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