RNA id: TCONS_00003961


Basic Information

Item Value
RNA id TCONS_00003961
length 2199
RNA type mRNA
GC content 0.48
exon number 11
gene id XLOC_002046
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 18877362 ~ 18906672 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGGAGAAAGCTGAGGAGGAAAGACAGAACATTTCAACATTTAATAGCGAACTGAAGGGCTACCGACAAAAAATAGCGTCTTTCCGACATTCCTCTTCATGCAATTGCAGAGGAGCTGCttgcaataaaataaaccctGCAAAGTTCTCTGGACAGTTCTGATAGCAAAAACTAGCAGCAGCAGTAAGCCAAGGTAAGAGCCGGAAGTGACGCAACAGCGGACCCGAAAGCGTGATTCCCATTCAAAATACAAGTACAAGAAAAGGATTTTAAAAAGTATCAGAagcacttttattttgaaaaacagcaTTTCCGGCGACTCTCTTGGAAATTTTGCTCTGGTCGCCTTCACACTGCTTATCAAGACTAGGGTCCGACATCGCCACTCTCGCCATGGCAGGAGCCGGAGGCGGGGGAAACGATGTGCAATGGTGCTTTTCACAAGTGAAAGGGGCGATTGATGATGACGTAGCCGAAGCCGACATCATCTCTACTGTGGAGTTCAACCACTCAGGGGAGCTGCTAGCCACAGGAGATAAAGGCGGACGAGTAGTCATCTTCCAACAAGAGACCGAGAACAAGAGTCAGCCACAGTGCCGTAGTGAatacaatgtttacagcacattTCAGAGCCACGAGCCTGAGTTTGACTACCTGAAGAGCTTGGAAATCGAGGAGAAGATTAACAAGATTCGCTGGCTACCACAGAAGAACGCTGCACAGTTTTTGTTGTCCACTAATGATAAAACTATAAAGTTGTGGAAGATCAGCGAGCGGGACAAGAGACCAGAGGGATACAATCTGAAAGAAGAGGATGGACGCTATAGAGATGCTTCTACCATCACAACTCTACGGGTGCCAGTATTTAGGCCTATGGATCTCATGGTGGAGGCCAGTCCGCGAAGGGTCTTTGCCAACGCTCACACCTACCACATCAACTCCATCTCGGTCAACAGCGACAATGAGACCTATCTGTCTGCAGACGACCTGCGCATTAACTTGTGGCACTTGGAGATCACAGACCGCAGCTTCAACATTGTGGACATTAAACCAGCCAACATGGAGGACCTAACGGAGGTTATCACAGCCGCAGAGTTTCACCCTCACCAATGTAACACGTTTGTCTACAGCAGCAGCAAAGGCACCATCCGCCTGTGTGACATGCGTGCATCAGCACTTTGTGACAAGCACTCTAAATtGTTTGAGGAGCCTGAAGACCCCAGCAACCGCTCTTTCTTTTCTGAAATCATCTCCTCTATCTCAGACGTCAAGTTCAGTCACAATGGCCGCTACATGATGACCCGAGACTACCTGTCAGTCAAAATCTGGGACCTCAATATGGAAAATCGACCCGTTGAGACATACCAGGTTCATGAGTACCTCAGGAGTAAGTTGTGCTCTCTTTATGAGAACGACTGCATCTTTGACAAATTCGAGTGCTGCTGGAACGGAAACGACAGCGTGGTGATGACTGGATCATACAACAACTTCTTCCGAATGTTGGACCGCACCCAGCGGCGAGATGTCACCCTGGAGGCTTCGCGCGAGAGCTGCAAGCCCCGGCAGGTCCTCAAGCCGCGCAGGGTTTGCGCAGGAGGCAAGCGGAAGAAGGACGAGATCAGCGTGGACAGCCTGGACTTCAACAAGAAGATCCTACACACCGCCTGGCACCCGCAGGAAAACATCATCGCAGTGGCAACCACCAACAACCTCTACATCTTCCAGGAAAAAGTGAACTAATACTGTCATCACGGGGAAAGAAAACCTCCGAACCTCTCTCGCTCTATGTGaaaccaacaaaaaaaagttgaactagcAAGAATCATTTCTGTGACAACCACCGTCATCACATAAACCAACCTTGGCCTACTCCAGGACAGGATGAACTAGTTGAGCCAACTAGCGGCTGCCAATACTGAGATAACTGGTTCAAGCTGGTCTGGAGAAGAAGCGCAACCTGGCTTTGGCCTCTGTGGCACCATGACATGCGCCTTGCACTGGTGATGTTGTGCCAACCTGTGTCTGTACCCTCCATCCCTTTTCCCCTTTACCCACAAGTCAGTCCGAGCCCAGGGATGAAATGGGCAGCAAAGCTCTGACAGATttcaaccagtttttttttttctttagtttttttttctttcatttttttggcTTCGGTTTCTTCAAGGTGTCTGTATAAAAACTAATTTGAACTCA

Function

GO:

id name namespace
GO:0070262 peptidyl-serine dephosphorylation biological_process
GO:0072554 blood vessel lumenization biological_process
GO:0005829 cytosol cellular_component
GO:0000159 protein phosphatase type 2A complex cellular_component
GO:0019888 protein phosphatase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5474 Predicted to enable protein phosphatase regulator activity. Acts upstream of or within blood vessel lumenization. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol. Orthologous to human PPP2R2A (protein phosphatase 2 regulatory subunit Balpha).

Ensembl:

ensembl_id ENSDART00000138334

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005702 lncRNA upstream 74927 18799100 ~ 18802435 (+) False XLOC_002045
TCONS_00005701 lncRNA upstream 74927 18799100 ~ 18802435 (+) False XLOC_002045
TCONS_00005703 lncRNA upstream 74927 18799827 ~ 18802435 (+) True XLOC_002045
TCONS_00003959 lncRNA upstream 75012 18798927 ~ 18802350 (+) False XLOC_002045
TCONS_00003960 lncRNA upstream 75012 18799827 ~ 18802350 (+) False XLOC_002045
TCONS_00003981 lncRNA downstream 676617 19583289 ~ 19589733 (+) False XLOC_002056
TCONS_00003980 lncRNA downstream 676617 19583289 ~ 19589733 (+) True XLOC_002056
TCONS_00003984 lncRNA downstream 695662 19602334 ~ 19615527 (+) False XLOC_002058
TCONS_00005866 lncRNA downstream 695724 19602396 ~ 19725594 (+) False XLOC_002058
TCONS_00005865 lncRNA downstream 695724 19602396 ~ 19725594 (+) False XLOC_002058
TCONS_00003958 mRNA upstream 317949 18557102 ~ 18559413 (+) True XLOC_002044
TCONS_00003956 mRNA upstream 931199 17936482 ~ 17946163 (+) True XLOC_002041
TCONS_00003955 mRNA upstream 933324 17936441 ~ 17944038 (+) False XLOC_002041
TCONS_00003951 mRNA upstream 951064 17850934 ~ 17926298 (+) False XLOC_002039
TCONS_00003964 mRNA downstream 4480 18911152 ~ 18935945 (+) False XLOC_002047
TCONS_00003966 mRNA downstream 45599 18952271 ~ 18992471 (+) True XLOC_002048
TCONS_00003967 mRNA downstream 110474 19017146 ~ 19021576 (+) True XLOC_002049
TCONS_00003968 mRNA downstream 120316 19026988 ~ 19082982 (+) False XLOC_002050
TCONS_00003971 mRNA downstream 132835 19039507 ~ 19093808 (+) False XLOC_002050
TCONS_00003957 other upstream 626294 18240798 ~ 18251068 (+) True XLOC_002043
TCONS_00003954 other upstream 987159 17890089 ~ 17890203 (+) True XLOC_002040
TCONS_00003947 other upstream 1156231 17715906 ~ 17721131 (+) False XLOC_002036
TCONS_00003944 other upstream 1182022 17695265 ~ 17695340 (+) True XLOC_002035
TCONS_00003940 other upstream 1422790 17454490 ~ 17454572 (+) True XLOC_002030
TCONS_00003965 other downstream 4503 18911175 ~ 18934541 (+) True XLOC_002047
TCONS_00003994 other downstream 1314694 20221366 ~ 20234045 (+) True XLOC_002060
TCONS_00003999 other downstream 1457757 20364429 ~ 20370089 (+) False XLOC_002062
TCONS_00004010 other downstream 1777364 20684036 ~ 20684150 (+) True XLOC_002071
TCONS_00004011 other downstream 2329892 21236564 ~ 21236678 (+) True XLOC_002075

Expression Profile

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