RNA id: TCONS_00003989


Basic Information

Item Value
RNA id TCONS_00003989
length 1636
RNA type mRNA
GC content 0.43
exon number 12
gene id XLOC_002059
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20070178 ~ 20146544 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAATGAGTGTTTAAGAGTGAAGCGCTGAAATCCTGCATCCCCGCACGGAAAGGACTGAATAAACCGCTGCCTTTAATCTGAGaTCTGTGTAACTGAAAAAACGAAGGAGGGAGTTTTATAGTTTACCTCAGTCATGCAGAAGGCAGGGACGGCCCCGTCTTCCCGGGGTCCAAGTGCGCCTGGGTCCCCCGCCACCTCTATTGTGGCACGAATGGACAATCAGGTCATTGGATATAAAGACTTGGCCGCAATTCCCAAAGACAAAGCCATACTAGAGGTGGAACGGCCAGATCTGATGGTGTACGAGCCACATTTCAATATGGCAGCACTGGATCATGTGGGTCTCTCCAGAAGCAGAGAGAGATCAATGTCTCCTCATTCAATCTCGCCTCCTCCTTCCCCTGAGATATCTGCATCTAAAGAGCTGAAGGACTGGTCAGAGCAGGGCTCTCCAGGAGGCTCCAATATGGGATCCACAACGCAGCTACGTAAAATCAGCCCTGCATCCAAAGGCCCCATGCAGCACTTCCACAGGCCAGACAGTGGTATCAACCTCTATAAGAAGCCGCCGATTTACAAAAACGAGAGACAAACTGGAGCGCCTCACAGTAAACAGGACTTGATCATCGTGTCCTCTAAGTTTCCAGCAGCTCAGCCACCAGACCCCAGCCTGCCGTCAAAGATCGAAACGGAGTACTGGCCTTGTCCTCCGTCACTCGCTACTATGGAGATTGAGTGGAGGAGGAAGGCAGCAGAACAAGGAAAACCAATGGAGGACGATGACTTTGAGGATCTGACAGAAGACGCAAAGAGACTCCAGGAGCAAGAGCTTCAGAAGataCAGTCCAACTTAGGCAAACTGATCCTGAAGGAGGAAATAGAGAAATCAGGACTCATCCGCAGAAAAACACGCTCTCTGCCAGATGGGACAAACATACATTTGGGATCATCAGCCAGCACTACTAAATCTGCCTCTTTACCTCCATGCAGTCGAACAGGCCTTACCAGGCTGCAGTCTGCAGACTTTTCCTCTACAGACAATGGAAAAGCAAAAACAGGTAAGATGTAaggatattaaaataacaaattaattaggCTTAGGTTATAAATTCATCATTATTAATGACTCAAATTACTGaatattaccaaaaaaaattGGAAGTAATTTTCAATTGttttcttcatgttttttttcaggTGTACCGGTAAGatgcttttgtttatttgattaacCAAGCATGGTCTTTTGGGGTTTGTTTTCTAATATGCCAGCAGCTTTTAGACTCTGACATGAAAACCACATCCTGTTCCTGCTACTAATGCCTCTTTACCCTGACATCGCCATTAGCCAGGGGTGTAAAAAAAAGTACTCTAAAGTGAAAGCACAGATTTTGAATGAAAACTTAAGTGAAAAATCTAGCAAAAAATAGACTTAAGTAAAGGAAAAACTACAGCTttaaattatacttaaatattaaagagcaaaaatacaaaagcagaaataaaaaatgacataAATATTGATTTATGATATTGAATCATCCTCTAATGCAAAGTGAAATTAATACatgaagtagggctgcacgatattggaaaattttgagattgtgatattttgttttgctgcagtacata

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006611 protein export from nucleus biological_process
GO:0051169 nuclear transport biological_process
GO:0005634 nucleus cellular_component
GO:0005643 nuclear pore cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005049 nuclear export signal receptor activity molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-030131-9438 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament bundle assembly and lamellipodium assembly. Predicted to act upstream of or within cytoskeleton organization. Predicted to be located in cytoplasm. Predicted to be active in actin cytoskeleton and plasma membrane. Is expressed in blood; nervous system; and ventral mesoderm. Orthologous to human DMTN (dematin actin binding protein).

Ensembl:

ensembl_id ENSDART00000142708

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005866 lncRNA upstream 382963 19602396 ~ 19725594 (+) False XLOC_002058
TCONS_00003998 lncRNA downstream 223063 20364406 ~ 20371698 (+) False XLOC_002062
TCONS_00004000 lncRNA downstream 223117 20364460 ~ 20371698 (+) False XLOC_002062
TCONS_00004001 lncRNA downstream 223277 20364620 ~ 20371698 (+) False XLOC_002062
TCONS_00004002 lncRNA downstream 228386 20369729 ~ 20371698 (+) True XLOC_002062
TCONS_00005870 lncRNA downstream 235745 20377088 ~ 20381313 (+) True XLOC_002063
TCONS_00003987 mRNA upstream 7376 20070180 ~ 20101181 (+) False XLOC_002059
TCONS_00003986 mRNA upstream 7377 20070178 ~ 20101180 (+) False XLOC_002059
TCONS_00003982 mRNA upstream 510548 19595009 ~ 19598009 (+) False XLOC_002057
TCONS_00003983 mRNA upstream 510548 19596214 ~ 19598009 (+) True XLOC_002057
TCONS_00003979 mRNA upstream 532595 19573791 ~ 19575962 (+) True XLOC_002055
TCONS_00003993 mRNA downstream 38820 20180163 ~ 20234383 (+) False XLOC_002060
TCONS_00003995 mRNA downstream 115111 20256454 ~ 20257175 (+) True XLOC_002061
TCONS_00003996 mRNA downstream 222666 20364009 ~ 20372269 (+) False XLOC_002062
TCONS_00003997 mRNA downstream 222812 20364155 ~ 20372142 (+) False XLOC_002062
TCONS_00004003 mRNA downstream 250740 20392083 ~ 20401485 (+) False XLOC_002064
TCONS_00003965 other upstream 1174016 18911175 ~ 18934541 (+) True XLOC_002047
TCONS_00003963 other upstream 1211953 18892047 ~ 18896604 (+) True XLOC_002046
TCONS_00003957 other upstream 1857489 18240798 ~ 18251068 (+) True XLOC_002043
TCONS_00003954 other upstream 2218354 17890089 ~ 17890203 (+) True XLOC_002040
TCONS_00003947 other upstream 2387426 17715906 ~ 17721131 (+) False XLOC_002036
TCONS_00003994 other downstream 80023 20221366 ~ 20234045 (+) True XLOC_002060
TCONS_00003999 other downstream 223086 20364429 ~ 20370089 (+) False XLOC_002062
TCONS_00004010 other downstream 542693 20684036 ~ 20684150 (+) True XLOC_002071
TCONS_00004011 other downstream 1095221 21236564 ~ 21236678 (+) True XLOC_002075
TCONS_00004013 other downstream 1255977 21397320 ~ 21399705 (+) False XLOC_002077

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_08582404_08594691.mRNA True 1413 mRNA 0.47 12 CI01000304 8582404 ~ 8594884 (+)