RNA id: CI01000304_08582404_08594691.mRNA


Basic Information

Item Value
RNA id CI01000304_08582404_08594691.mRNA
length 1413
RNA type mRNA
GC content 0.47
exon number 12
gene id CI01000304_08582404_08594691
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 8582404 ~ 8594884 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTGTGTAACTGGAAGAACAAAGAAGGGAGTTTTATTGTTTTCCTCAGTCATGCAGAAGGCAGGGACGGCCCCGTCTTCCCGGGGTCCAAGTGCTCCTGGATCCCCAGCCACCTCTATTGTGTTCCTAGGAACCCCATGAGGCATTTTAGAGGACAACTGCTTCTTTCACGCCAAACTGAACTCAGCCTCTTTCTTTTTAACTCCCCAAAGGCACGAATGGACAATCAGGTCATTGGATATAAAGACTTGGCTGCCATTCCCAAAGACAAAGCCATACTTGAGGTGGAACGGCCAGATCTGATGGTGTACGAGCCGCATTTCAATATCTCAGCCCTAGATCGAATGGGTCTCTCCAGAAGCAGAGAGAGATCAATGTCACCTCATTCTATCTCGCCCCCTCCTTCCCCTGAGATATTTGCCTCAAAGGAGTCGAAGGAATGGCCAGAGCAGGGGTCTCCAGGAGGGTCTAACATGGGCTCCACGGTGCAGCTCCGCAAAATCAGCTCTGCCTCCAAAGGCCCCATGCAGCACTTCCACAGGCCAGACAGAGAGACTGTAACATCTCATAATAAACAGGATGTCATCATTGAGTCCTCCAAGTTCCCAGCAGCCCAACCACCTGATCCTAACCAGCCTTCAAAGATAGAGACAGAGTACTGGCCCTGCCCACCCTCTCTAGCTACTATGGAGATCGAGTGGAGGAAGAAGGCAGCCGAGCAGGGAAAACCAGTGGAGGACGATGAGTTTGAAGACCTGACTGAAGATGCAAAGAGACTCCAAGAACAGGAACTACAGAAGATACAGTCCAACTTAGGCAAATTGATCCTGAAGGAGGAAATAGAGAAATCAGTGCTCATCCGCAGAAAAACACGTTCCCTGCCAGATGGGACAAACATACATTTGGGATCATCAGCCAGTGCTACTAAATCTGCCTCTTTACCTCCTTGCAGTAGAACAGGCCTCACAAGGCTGCAGTCCGCAGACTTTACCTCCACAGACAATGGCAAAGTAAAAACAGGTAAGATATATCCATATGAAATGCTAATTGTGACCCACAGAGGGCGCAGTAAACTTCCTCCAGGTGTTGACAGAACCAGATTAGAGAGGCATCTGTCTCCAGAAGAGTTCCAGAGCTTATTTGGAATGTCCATCACAGACTTTGATCGTCTGTCACTATGGAAACGGAATGACCTGAAGAAGAAAGTGTCCCTTTTCTAACATTTGGACATTTTGGACTTGGACACTGAAACACTCTCCCTCCAGAGACGCTAGTAATATCCACTCTAATCTAATACGGATGCTATGCAGACATTTCAAGATAAGCAAAGAAGGTGACGCAGCATTACAAGATGTTATTTCAATCACATATACAGCAGTCTCTCTCTCTCTATATATGTCTCTGGTGTACATA

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU486075 lncRNA upstream 39727 8542430 ~ 8542677 (+) True G423252
TU486052 lncRNA upstream 45538 8483902 ~ 8536866 (+) False G423234
TU486077 lncRNA downstream 3833 8598717 ~ 8599084 (+) True G423254
TU486079 lncRNA downstream 5565 8600449 ~ 8600652 (+) True G423256
TU486146 lncRNA downstream 266997 8861881 ~ 8862095 (+) True G423315
TU486140 lncRNA downstream 303098 8897982 ~ 8899925 (+) False G423310
TU486141 lncRNA downstream 303098 8897982 ~ 8908476 (+) True G423310
CI01000304_08547909_08562342.mRNA mRNA upstream 19800 8547909 ~ 8562604 (+) True CI01000304_08547909_08562342
CI01000304_08232073_08235598.mRNA mRNA upstream 346749 8231293 ~ 8235655 (+) False CI01000304_08232073_08235598
CI01000304_08222591_08229908.mRNA mRNA upstream 351457 8222591 ~ 8230947 (+) True CI01000304_08222591_08229908
CI01000304_08120416_08124549.mRNA mRNA upstream 457807 8120416 ~ 8124597 (+) True CI01000304_08120416_08124549
CI01000304_07989774_08014921.mRNA mRNA upstream 567100 7988902 ~ 8015304 (+) True CI01000304_07989774_08014921
CI01000304_08624038_08653167.mRNA mRNA downstream 29154 8624038 ~ 8653550 (+) True CI01000304_08624038_08653167
CI01000304_08671901_08672203.mRNA mRNA downstream 76920 8671804 ~ 8672553 (+) False CI01000304_08671901_08672203
CI01000304_08741397_08752689.mRNA mRNA downstream 146513 8741397 ~ 8752689 (+) True CI01000304_08741397_08752689
CI01000304_08864119_08871322.mRNA mRNA downstream 268893 8863777 ~ 8871689 (+) True CI01000304_08864119_08871322
CI01000304_08878926_08892802.mRNA mRNA downstream 284042 8878926 ~ 8894049 (+) True CI01000304_08878926_08892802
TU485809 other upstream 347444 8234441 ~ 8234534 (+) True G423009
TU485573 other upstream 601669 7978628 ~ 7978814 (+) True G422786
TU484021 other upstream 1097716 7484141 ~ 7484688 (+) True G421435
TU483945 other upstream 1228072 7352649 ~ 7354332 (+) True CI01000304_07352697_07354032
TU483706 other upstream 2339407 6241233 ~ 6242997 (+) True G421162
TU486091 other downstream 76886 8671770 ~ 8672555 (+) True CI01000304_08671901_08672203
TU486477 other downstream 354152 8949036 ~ 8949422 (+) True G423614
TU486746 other downstream 969721 9564605 ~ 9565573 (+) True CI01000304_09564068_09565679
TU487178 other downstream 1525515 10120399 ~ 10127322 (+) True G424246
TU487194 other downstream 1593938 10188822 ~ 10189404 (+) False G424251

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00003989 False 1636 mRNA 0.43 12 NC_007121.7 20108557 ~ 20141343 (+)
bowfin (Amia calva) AMCG00020989 True 3678 mRNA 0.40 14 CM030127.1 40369234 ~ 40386635 (+)