RNA id: TCONS_00003975


Basic Information

Item Value
RNA id TCONS_00003975
length 2872
RNA type mRNA
GC content 0.39
exon number 9
gene id XLOC_002052
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 19525839 ~ 19551118 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTTGTCTCACAGTGAAGCCATTCAGATGGTGAAGACTAAACCTAAGAGATGAACGGGCCCTCCATCTTCTCTTTTCATTTCCAGGCTTAAGCGTGTTTCTTCAAGACTTCAATCTGCTGAATGGGAGAAAGTGGCACAAAAAGCCCTGTCCAAACATGAATGTACAAAATCGCTGCTGCAACAAAAGATGTCGAAAATGGCCTTGCGTTACACGAACAAGTTTGTCCCCGTCGTCCTCATTTATGATATTGACTGTGTTCATCCTGTTTCTCAAAGCAAACGTGGCAGTGGCGATGAAAGTGACCTCCAGTGGCCCGCAGACGATGCAAATGGCTCAAGGAGAATCTGTTACACTAGACTGCACCTACTCGTCTGGTCCAGCAGACACAGGAGAGCTTGACATTGAGTGGTCAGTCATCAGCCCAGACACCACCAAAAAAGACCAGATGATCATATCATACACAGGAGGAAGGCGATATACTTATGGCGACCCTGCTTTGATGAAAGGTCTGGACTTCACTGCTCCAGATCCTGGTCAAGGAGATGCGTCTCTGTCTATAGCCTCTCTGACTGACAGTCATGCTGGAACATATCAGTGCAAGGTCAAAAAGGCACCAGGGGTTGACAGCCGCAAAATATCACTAGTTGTGATGGTGAGACCGTCTGTGCCGAATTGCTGGATTGATGGCGGTGGAGGAGTGGGTGAAGCGGCGTCTCTCCGCTGCAGATCAGACGAGGGCTCCGCGCCGCTGCTGTACTCATGGAGGAGAGAGAGCGGAGGAGCGATTCCTGCAGACGCCACTCAGAaTTCCCTCACGGGAGAACTTCTGATCAGTAATCTCTCCACAAGTCACACCGGTGTGTATTCCTGCGAGGTTTCCAATGCTGTAGGGAAAGAAAGCTGCCGACTAACCCTTCAAGCTGTAAAGCCTCCTAATAGAGCAGGAGTGATAACAGGCACTGTTGTTGGCTGTTTACTACTCATCATGATCGTCCTGCTCATTATCTGGCTCCTCGTCTTCAGATGTAACTGGAATCGACAGGAGAAAGAGTTCTCGAATGAGATTAGAGAGGACGCTCCTGCACCTGAGAGTCGCCCAAACAGCCGAGTCTCCAGCTTCCGCTCAGGTGTGGCCTACAGTCAGGTGGGACAAACACAAAATGAACATCCAACCTCCAGCAACACCAGCTACAGCACGGCAAAATATGACAGCAGATTTGGTTATGCTGTGTGAGAGACTGTAAGTCACAGTGGTATCGATGTGCAGCAGAGAGGAAAATATATCAAGTGACTGTAGTAAAAATGTTagcaaaaatgaacaaaactgcCCCAAAAAATCTAGAAAAGGAGGTAAAACAACACTGCAAATCTGTATGTTTGTCACAAGCAAAGTGAAATATTTGCTGTATTACATTTAGATCAATGCACATTGcatcagatttgtgtgtgtgtgcgtgtgtgtgtgtgcgcgcagagTTTTGAGCAGAAATTCTCTTATCTTATGAACATTAACAAGCAGATACAATGTAAGACATTCATTTATTGACTATAACTTGCTTGAGTTAAATGATTATTGGTTCTTGCATAACTTGTGCTGGACTAGCATCATTGACTGGTATGTTTTGTCTGTATAGCCAGAATATGACATTCCGTTTCACACGGTACAAACTGTGTTTAACATGTATTATATTAATCAACATTCATAATCATAGCTAAAGTGTAGTAACTAGACTTTTGGTCAAAATTGAGTTAAAGCCTAAAATGGATTAGTGACATCTGTTGAACTCTCCTGGTTCAATTTTATCctgattcagaaaaaaacaagagtGTCAAAACTGCAGTAACTACAAAACCCAAGctgatgtaaaaaaacaaaagaaaacatctgAATGGCTGCAACCCTGCAATGTATAGCCATTATATATTATGCataatttatattagtcttttcaACAGAATGTTAATACATTTTCATTGAAATGTTTTTTGATTGTGCACTgacacaaatacatttaataatacatttcattCACATAGCTCctataaatgtacaaaaatggaACTGAAAAGAAATACTATagtacaaaatataatgaaatGTTGCTATTAATGACCCTCAGTTATCTAAGAGTTACAgcatgtgacttttttttcttaatgaattGTCGGGAGCCATTTATTTCAATTAAGTTTtgtctgtgtatgtttttttaaacTCTGAAAGTGCGTTAGCCATTGCCTTGTCCACAGTTTTGGCTACGAATAATTTTTAATCTTCTATTGAAGAAACACTTAAACAGTCTCTTAAATggattttaatgtaattaacttTTTGACTATAAAATGCTTTGCATTCAGTCATGTTGCAATATAATGTATGAAATCaaaatgtgtttgtaaatgtaattattttctaatGTGATAAGGATTCATATGAGTGAAGCatacattatgaattaaattacgCAAAACCAGATACTGATCATATCAGGCAATATTAGTAGCTTTTTAAAAAGGCCTAATGGTAATATTTGTTTGTGAGGAGAGCCTTAATTGTTGacgtttttttaaacatgatgtaacttcatttatattatttcccATGAGATTTAAAGGTTTATGTGATGACTGAAAATGaactttgtgttttgttgtttttaaacaatgtctgctatgctttttttcttcttttttttttgcttatttgctGATATTAGGGTTTTTTGTACAAGAACAAAGTTTGGATGGATTTGTGTGTGACTATGAAATAATTAGTTGTTTTCTTCAGCATTTCTGGAACTAATATTTGCTGATGTTATACTGATAGGTTGAATTTTTatgaattgtaataaaaaatgaagaaaacgTG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-338 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human VSIG8 (V-set and immunoglobulin domain containing 8).

Ensembl:

ensembl_id ENSDART00000162912

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005702 lncRNA upstream 723404 18799100 ~ 18802435 (+) False XLOC_002045
TCONS_00003981 lncRNA downstream 32171 19583289 ~ 19589733 (+) False XLOC_002056
TCONS_00003980 lncRNA downstream 32171 19583289 ~ 19589733 (+) True XLOC_002056
TCONS_00003984 lncRNA downstream 51216 19602334 ~ 19615527 (+) False XLOC_002058
TCONS_00005866 lncRNA downstream 51278 19602396 ~ 19725594 (+) False XLOC_002058
TCONS_00005865 lncRNA downstream 51278 19602396 ~ 19725594 (+) False XLOC_002058
TCONS_00003973 mRNA upstream 131348 19338255 ~ 19394491 (+) True XLOC_002051
TCONS_00003972 mRNA upstream 186049 19310688 ~ 19339790 (+) False XLOC_002051
TCONS_00003971 mRNA upstream 432031 19039507 ~ 19093808 (+) False XLOC_002050
TCONS_00003970 mRNA upstream 432031 19039507 ~ 19093808 (+) False XLOC_002050
TCONS_00003969 mRNA upstream 432031 19039507 ~ 19093808 (+) True XLOC_002050
TCONS_00003977 mRNA downstream 3486 19554604 ~ 19566474 (+) True XLOC_002053
TCONS_00003978 mRNA downstream 17934 19569052 ~ 19570346 (+) True XLOC_002054
TCONS_00003979 mRNA downstream 22673 19573791 ~ 19575962 (+) True XLOC_002055
TCONS_00003982 mRNA downstream 43891 19595009 ~ 19598009 (+) False XLOC_002057
TCONS_00003983 mRNA downstream 45096 19596214 ~ 19598009 (+) True XLOC_002057
TCONS_00003965 other upstream 591298 18911175 ~ 18934541 (+) True XLOC_002047
TCONS_00003963 other upstream 629235 18892047 ~ 18896604 (+) True XLOC_002046
TCONS_00003957 other upstream 1274771 18240798 ~ 18251068 (+) True XLOC_002043
TCONS_00003954 other upstream 1635636 17890089 ~ 17890203 (+) True XLOC_002040
TCONS_00003947 other upstream 1804708 17715906 ~ 17721131 (+) False XLOC_002036
TCONS_00003994 other downstream 670248 20221366 ~ 20234045 (+) True XLOC_002060
TCONS_00003999 other downstream 813311 20364429 ~ 20370089 (+) False XLOC_002062
TCONS_00004010 other downstream 1132918 20684036 ~ 20684150 (+) True XLOC_002071
TCONS_00004011 other downstream 1685446 21236564 ~ 21236678 (+) True XLOC_002075
TCONS_00004013 other downstream 1846202 21397320 ~ 21399705 (+) False XLOC_002077

Expression Profile

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